View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19747_high_7 (Length: 401)
Name: NF19747_high_7
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 82 - 288
Target Start/End: Complemental strand, 40815340 - 40815134
Alignment:
| Q |
82 |
ttttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaattttataaaggctcccatagaaaatatatataggtataat |
181 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40815340 |
ttttaacgttgcgggatgcccaaagttaaatttgaacccaaaaccttagttaaactagaattttataaaggctcccatagaaaatatatataggtataat |
40815241 |
T |
|
| Q |
182 |
aacaaagtaaatcttcgcggtatccattgtacctatgtacagtaggtttctatgtagtctgagggttcaaggccatgttatcaagatcagatgattcaga |
281 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
40815240 |
aacaaagtaaatcttggcggtatccattgtacctatgtacaataggtttctatgtagtccgagggttcaaggtcatgttattaagatcagatgattcaga |
40815141 |
T |
|
| Q |
282 |
tttcaac |
288 |
Q |
| |
|
||||||| |
|
|
| T |
40815140 |
tttcaac |
40815134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40815976 - 40815891
Alignment:
| Q |
1 |
ggatatcctccacgtgcaattgcagagactaattccttatgctttttgagacccaaacagacgatagaatcttcctaaaaatttta |
86 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| | | ||||||||||| ||||| |
|
|
| T |
40815976 |
ggatatcctccacgtacaattgcagagattaattccttatgctttttgagacccaaaatgacgacaaactcttcctaaaagtttta |
40815891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 40815087 - 40815036
Alignment:
| Q |
339 |
atatctacaatcctaactgaatctgatccaattccctatcgaccaccccttt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40815087 |
atatctacaatcctaactgaatctgatccaattccctatcgaccaccccttt |
40815036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 33096843 - 33096782
Alignment:
| Q |
80 |
aattttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
141 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| || ||||||||||||| ||||| |
|
|
| T |
33096843 |
aattttaacgttgctgcacacccaaagttgaattcgaactcagaaccttagttaaattagaa |
33096782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 2804542 - 2804609
Alignment:
| Q |
74 |
cctaaaaattttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
141 |
Q |
| |
|
||||||| |||||||| ||| |||||| ||| |||| ||| |||||||||||||| ||||| |||||| |
|
|
| T |
2804542 |
cctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaa |
2804609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 34210071 - 34210112
Alignment:
| Q |
80 |
aattttaacgttgcggcatgcccaaagttgaatttgaaccca |
121 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
34210071 |
aattttaacgctgctgcatgcacaaagttgaatttgaaccca |
34210112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 32534156 - 32534097
Alignment:
| Q |
82 |
ttttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
141 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||| |||||||||| ||||| |||||| |
|
|
| T |
32534156 |
ttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagctagaa |
32534097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 10841098 - 10841038
Alignment:
| Q |
74 |
cctaaaaattttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | ||||||||||||||||| ||| ||||| |
|
|
| T |
10841098 |
cctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatcttggttaa |
10841038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University