View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19747_low_1 (Length: 680)
Name: NF19747_low_1
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 7 - 665
Target Start/End: Original strand, 43194353 - 43195020
Alignment:
| Q |
7 |
gagagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagacagctgtagagaatgtatgtcctggcgttgtatc |
106 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43194353 |
gagagaaaaacgcaaatccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagacagccgtagagaatgtatgtcctggcgttgtatc |
43194452 |
T |
|
| Q |
107 |
atgtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagtgtagtcatata-------attaattactcaaataatcaaaatctaatt |
199 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
43194453 |
atgtgctgatatccttgccatcgctgccgcggactccgttgcaatcgtaagtgtagtcatatatcaatgaattaattactcaaacaatcaaaatctaatt |
43194552 |
T |
|
| Q |
200 |
aatacttcaattgcaagtataatcatgcaaaagtaaattaagtgaaaattaatcaatatttcaattgtcgtgtttcttttaatttacatgatagcttggt |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43194553 |
aatacttcaattgcaagtgtaatcatgcaaaagtaaattaagtgaaaattaatcaatatttcaactgtcgtgtttcttttaatttacatgatagcttggt |
43194652 |
T |
|
| Q |
300 |
ggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaaaccttaata |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43194653 |
ggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcaatcccggcaccaacttcaaaccttaata |
43194752 |
T |
|
| Q |
400 |
cactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggtgcaattgcattgatttggacgataagcctatg--nnnn |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43194753 |
cactcacctcaatgtttagtgctgttggtctttccagcaaggacttggtcacattgtcaggtgcaattgcattgatttggacgataagcctatgtttttt |
43194852 |
T |
|
| Q |
498 |
nnnnacttatatttaattcaaatatataatttcacaattgggaagagcacataattttcaaataattaatttggtgtgttaattaattgactaggtgctc |
597 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
43194853 |
ttttacttatatttagttcaaatatataatttcacaattgggaagagcacataattttcaaataattaatttggtgtcttaattaattgattaggtgctc |
43194952 |
T |
|
| Q |
598 |
acacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacatagatact |
665 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43194953 |
acacaattggacaagcaaggtgcacaacctttagggcacgaatctacaatgagaccaacatagatact |
43195020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 291 - 461
Target Start/End: Original strand, 43180297 - 43180467
Alignment:
| Q |
291 |
tagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaa |
390 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||| || ||||| ||||||||||| | |
|
|
| T |
43180297 |
tagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttcca |
43180396 |
T |
|
| Q |
391 |
accttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggt |
461 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
43180397 |
acctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggt |
43180467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 275 - 473
Target Start/End: Original strand, 43189133 - 43189331
Alignment:
| Q |
275 |
cttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||||||| ||| ||||| || ||| |
|
|
| T |
43189133 |
cttttaatttacatgatagcttggtggcccaacctggaatgtaaaacttggaagaagagatgccacaactgctagtcaatctgatgcgaacactgccatc |
43189232 |
T |
|
| Q |
375 |
ccagcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggtgcaattgcattg |
473 |
Q |
| |
|
||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||| | ||||||||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
43189233 |
ccaagaccaacttccaaccttaatatactcacctcaatgtttaagaatgttggtctttccaccaaggacttagtcgcattgtcaggtacaattccattg |
43189331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 522 - 665
Target Start/End: Original strand, 43189847 - 43189990
Alignment:
| Q |
522 |
tataatttcacaattgggaagagcacataattttcaaataattaatttggtgtgttaattaattgactaggtgctcacacaattggacaagcaagatgca |
621 |
Q |
| |
|
||||||||| ||| |||||||| | |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43189847 |
tataatttctcaactgggaagaactaataattgtcaaataactaatttggtgtcttaattaattgactaggtgctcacacaattggacaagcaaggtgca |
43189946 |
T |
|
| Q |
622 |
caacctttagggcacgaatctacaatgagaccaacatagatact |
665 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43189947 |
caacatttagggtacgaatctacaatgagaccaacatagatact |
43189990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 43180072 - 43180222
Alignment:
| Q |
9 |
gagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagacagctgtagagaatgtatgtcctggcgttgtatcat |
108 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| || || |||||||||| |
|
|
| T |
43180072 |
gagaagaatgcaaatccaaatagaaactccgctcgtggatttgatgtcatcgacaacataaagacagccgtagagaacgtatgccccggagttgtatcat |
43180171 |
T |
|
| Q |
109 |
gtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagtg |
159 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
43180172 |
gtgctgatatcctagccattgctgccgcagactctgttgcaattgtaagtg |
43180222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 43188899 - 43189050
Alignment:
| Q |
7 |
gagagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagacagctgtagagaatgtatgtcctggcgttgtatc |
106 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||||||||| ||||| || |||||||| ||||| || || |||||||| |
|
|
| T |
43188899 |
gagagaagaacgcactcccgaataagaactctgttcgaggattcgatgtcattgacaacataaagacggcggtagagaacgtatgccccggagttgtatc |
43188998 |
T |
|
| Q |
107 |
atgtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagt |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||| |||||| |
|
|
| T |
43188999 |
atgtgctgatatccttgccattgctgccacagactccgttgcaattgtaagt |
43189050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 559 - 659
Target Start/End: Original strand, 43180559 - 43180659
Alignment:
| Q |
559 |
ataattaatttggtgtgttaattaattgactaggtgctcacacaattggacaagcaagatgcacaacctttagggcacgaatctacaatgagaccaacat |
658 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||| |||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
43180559 |
ataattaatttggagtcttaattaattgaacaggtgcacacacaattggacaagcaaggtgtacaaattttagggcacgaatctacaacgagaccaacat |
43180658 |
T |
|
| Q |
659 |
a |
659 |
Q |
| |
|
| |
|
|
| T |
43180659 |
a |
43180659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 36190635 - 36190800
Alignment:
| Q |
292 |
agcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaaa |
391 |
Q |
| |
|
||||||| |||||||| ||| | || ||||||||||||||||| || | || |||||| |||| ||||| |||| | ||||||||||| ||||||| |
|
|
| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagctagtaaatcagctgcaaacaatgacatcccagcacccacttcaag |
36190734 |
T |
|
| Q |
392 |
ccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtc |
457 |
Q |
| |
|
||| || ||||| ||||| ||||| |||| |||||||||| | |||||| |||||| ||||||| |
|
|
| T |
36190735 |
cctcaaccaactcatctcaaggtttaatgctcttggtctttccaccaaggatttggtcgcattgtc |
36190800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University