View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_11 (Length: 348)
Name: NF19747_low_11
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 49019733 - 49019402
Alignment:
| Q |
1 |
aggagttgagagtaatatttgattgaaatgttgaggttgaagtgagagaaaggattnnnnnnntgaatgagatttataggtgtgtatgaataagaatgag |
100 |
Q |
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| T |
49019733 |
aggagttgagagtaatatttgattgaaatgttgaggttgaagtgagagaaaggattgggggg-tgaatgagatttataggtgtgtatgaataagaatgag |
49019635 |
T |
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| Q |
101 |
agtattaagaagaagaagtgtgagagtgtttagaaaagagcatgcgggtgatggaaccaagaatcatgattgtaggcataatgaagtgagtaggattatg |
200 |
Q |
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| T |
49019634 |
agtattaagaagaag---tgtgagagtgtttagaaaagagcatgcgggtgatggaaccaagaatcatgattgtaggcataatgaagtgagtaggattatg |
49019538 |
T |
|
| Q |
201 |
atatgcaacatttatttttgttaagtgnnnnnnnnagtgcaaccttcaattgttctttgtctctattctccactcaccttcatcactgtttctttt---- |
296 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
49019537 |
atatgcaacatttatttttgttaagtgtttttttg-gtgcaaccttcaattgttctttgtttctattctccactcaccttcatcactgtttttttttttt |
49019439 |
T |
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| Q |
297 |
---aaatttctagttttgcatatctttagtatcctac |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49019438 |
ttaaaatttctagttttgcatatctttagtatcctac |
49019402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 7082175 - 7082253
Alignment:
| Q |
132 |
agaaaagagcatgcgggtgatggaaccaagaatcatgattgtaggcataatgaagtgagtaggattatgatatgcaaca |
210 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||||| |
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| T |
7082175 |
agaagagagcatgcgggtgatgaaaccaagaatcatgattttgggcataatgaagtgaatgggattatgatatgcaaca |
7082253 |
T |
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