View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19747_low_16 (Length: 314)

Name: NF19747_low_16
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19747_low_16
NF19747_low_16
[»] chr7 (40 HSPs)
chr7 (104-304)||(18258245-18258445)
chr7 (151-290)||(34129607-34129747)
chr7 (158-291)||(19231910-19232044)
chr7 (104-290)||(10666192-10666386)
chr7 (104-290)||(47165996-47166182)
chr7 (123-290)||(28131543-28131704)
chr7 (182-276)||(41680197-41680291)
chr7 (18-90)||(18258523-18258595)
chr7 (182-290)||(8466063-8466169)
chr7 (20-90)||(41680367-41680437)
chr7 (19-90)||(34129405-34129476)
chr7 (23-82)||(8465835-8465894)
chr7 (19-90)||(19231720-19231791)
chr7 (19-86)||(47166263-47166330)
chr7 (18-74)||(10666479-10666535)
chr7 (171-269)||(42148486-42148586)
chr7 (183-269)||(12188767-12188854)
chr7 (183-269)||(19860181-19860268)
chr7 (183-270)||(15730817-15730904)
chr7 (183-270)||(48807667-48807754)
chr7 (18-90)||(28131393-28131465)
chr7 (23-68)||(2205385-2205430)
chr7 (23-68)||(18138762-18138807)
chr7 (23-68)||(18400937-18400982)
chr7 (23-68)||(18407921-18407966)
chr7 (213-271)||(18138487-18138544)
chr7 (18-74)||(24442791-24442847)
chr7 (182-245)||(19392631-19392694)
chr7 (182-252)||(19389587-19389657)
chr7 (18-72)||(19392846-19392900)
chr7 (213-268)||(2205646-2205700)
chr7 (23-68)||(15730586-15730631)
chr7 (23-67)||(48807921-48807965)
chr7 (19-82)||(18256975-18257038)
chr7 (183-270)||(30255203-30255289)
chr7 (22-68)||(19389377-19389423)
chr7 (23-68)||(30254971-30255016)
chr7 (182-250)||(25844714-25844781)
chr7 (203-243)||(31189579-31189619)
chr7 (18-74)||(31189788-31189844)
[»] chr6 (26 HSPs)
chr6 (104-290)||(8613893-8614080)
chr6 (104-290)||(5754155-5754341)
chr6 (151-290)||(33317892-33318032)
chr6 (161-290)||(14075531-14075660)
chr6 (182-290)||(18018953-18019059)
chr6 (19-90)||(33317697-33317768)
chr6 (27-90)||(8613753-8613816)
chr6 (19-82)||(14075312-14075375)
chr6 (183-270)||(11250622-11250710)
chr6 (18-82)||(18019236-18019300)
chr6 (183-269)||(27507500-27507586)
chr6 (183-270)||(1585257-1585344)
chr6 (183-268)||(22859044-22859126)
chr6 (183-269)||(27524714-27524800)
chr6 (20-74)||(19219352-19219406)
chr6 (183-269)||(16790126-16790212)
chr6 (23-68)||(22859312-22859357)
chr6 (204-246)||(10358259-10358301)
chr6 (23-68)||(1585530-1585575)
chr6 (23-68)||(11250403-11250448)
chr6 (23-68)||(16789897-16789942)
chr6 (23-68)||(27507771-27507816)
chr6 (23-68)||(27524985-27525030)
chr6 (104-163)||(14075460-14075519)
chr6 (197-246)||(21996862-21996911)
chr6 (18-74)||(19734661-19734717)
[»] chr5 (29 HSPs)
chr5 (104-290)||(7864572-7864758)
chr5 (151-290)||(9810870-9811010)
chr5 (151-290)||(12703111-12703251)
chr5 (151-290)||(12764126-12764266)
chr5 (104-290)||(31097796-31097980)
chr5 (104-269)||(25804532-25804707)
chr5 (169-291)||(39428469-39428591)
chr5 (184-290)||(20942101-20942206)
chr5 (27-90)||(7864835-7864898)
chr5 (19-86)||(9811136-9811203)
chr5 (19-86)||(12703377-12703444)
chr5 (19-86)||(12764393-12764460)
chr5 (19-82)||(25804792-25804855)
chr5 (182-238)||(22942288-22942344)
chr5 (19-82)||(20941859-20941922)
chr5 (19-82)||(31097648-31097711)
chr5 (18-74)||(39428270-39428326)
chr5 (183-269)||(32962-33049)
chr5 (183-270)||(24932457-24932544)
chr5 (18-74)||(5098478-5098533)
chr5 (183-270)||(23546986-23547073)
chr5 (23-68)||(32732-32777)
chr5 (21-74)||(39536015-39536068)
chr5 (104-163)||(20942007-20942066)
chr5 (183-243)||(12788839-12788900)
chr5 (23-68)||(12789087-12789132)
chr5 (23-68)||(23546755-23546800)
chr5 (23-68)||(24932730-24932775)
chr5 (27-75)||(28719119-28719167)
[»] chr8 (34 HSPs)
chr8 (123-290)||(22658641-22658815)
chr8 (104-288)||(2962058-2962249)
chr8 (183-290)||(6431887-6431993)
chr8 (182-290)||(8370384-8370490)
chr8 (182-290)||(26242100-26242206)
chr8 (19-90)||(26652690-26652761)
chr8 (104-265)||(21970311-21970473)
chr8 (19-90)||(6431719-6431790)
chr8 (19-90)||(2962326-2962397)
chr8 (19-86)||(22658897-22658964)
chr8 (19-82)||(26241860-26241923)
chr8 (165-290)||(26652414-26652539)
chr8 (19-82)||(8370660-8370723)
chr8 (18-82)||(25612026-25612090)
chr8 (19-75)||(21970165-21970221)
chr8 (183-270)||(45533424-45533511)
chr8 (183-272)||(21917738-21917827)
chr8 (183-270)||(29561912-29561999)
chr8 (183-268)||(27006673-27006755)
chr8 (183-268)||(27013816-27013898)
chr8 (23-74)||(8781304-8781355)
chr8 (20-90)||(18836177-18836247)
chr8 (183-270)||(22646819-22646906)
chr8 (23-68)||(21917508-21917553)
chr8 (23-68)||(22130033-22130078)
chr8 (23-68)||(27006941-27006986)
chr8 (23-68)||(27014084-27014129)
chr8 (104-225)||(25612175-25612309)
chr8 (182-247)||(18836379-18836443)
chr8 (23-68)||(27879911-27879956)
chr8 (23-68)||(28020092-28020137)
chr8 (23-68)||(45533697-45533742)
chr8 (182-250)||(37031465-37031532)
chr8 (213-245)||(35520763-35520795)
[»] chr2 (13 HSPs)
chr2 (104-290)||(24228357-24228536)
chr2 (23-90)||(24228613-24228680)
chr2 (167-288)||(32739151-32739272)
chr2 (171-291)||(24761885-24762003)
chr2 (168-269)||(19617455-19617558)
chr2 (18-90)||(32739394-32739466)
chr2 (183-269)||(24249184-24249271)
chr2 (18-74)||(24763088-24763144)
chr2 (18-74)||(37443997-37444053)
chr2 (23-68)||(24249456-24249501)
chr2 (23-68)||(30175210-30175255)
chr2 (20-74)||(15341458-15341512)
chr2 (213-245)||(30175471-30175503)
[»] chr3 (25 HSPs)
chr3 (104-290)||(15316312-15316498)
chr3 (104-288)||(25977856-25978048)
chr3 (161-290)||(28089171-28089301)
chr3 (104-269)||(21399774-21399944)
chr3 (185-290)||(15845655-15845758)
chr3 (182-290)||(21035309-21035415)
chr3 (104-271)||(13330121-13330302)
chr3 (18-90)||(25978126-25978198)
chr3 (19-90)||(15316575-15316646)
chr3 (19-82)||(15845943-15846006)
chr3 (19-82)||(21399626-21399689)
chr3 (19-90)||(28088945-28089016)
chr3 (19-82)||(21035070-21035132)
chr3 (183-271)||(55428088-55428176)
chr3 (183-270)||(12332262-12332349)
chr3 (183-270)||(12300961-12301048)
chr3 (20-90)||(26817124-26817194)
chr3 (23-68)||(20146978-20147023)
chr3 (23-68)||(12300743-12300788)
chr3 (23-68)||(12332044-12332089)
chr3 (18-74)||(14147849-14147905)
chr3 (47-82)||(13330000-13330035)
chr3 (195-245)||(4471868-4471917)
chr3 (213-268)||(20146708-20146762)
chr3 (23-68)||(55427854-55427899)
[»] chr4 (48 HSPs)
chr4 (104-288)||(15651535-15651726)
chr4 (156-290)||(4547099-4547233)
chr4 (182-290)||(15462578-15462684)
chr4 (18-89)||(4546894-4546965)
chr4 (104-236)||(9488527-9488653)
chr4 (182-269)||(28916923-28917007)
chr4 (18-90)||(9488377-9488449)
chr4 (167-289)||(34976570-34976690)
chr4 (19-82)||(15462333-15462396)
chr4 (19-79)||(34976384-34976444)
chr4 (182-291)||(11482936-11483045)
chr4 (19-82)||(11483212-11483275)
chr4 (19-82)||(28917182-28917245)
chr4 (168-290)||(30039664-30039784)
chr4 (18-74)||(11421816-11421872)
chr4 (183-269)||(2678076-2678163)
chr4 (183-269)||(26532677-26532764)
chr4 (183-270)||(18164226-18164313)
chr4 (18-74)||(30039919-30039975)
chr4 (183-270)||(4675101-4675188)
chr4 (183-270)||(20245002-20245089)
chr4 (183-269)||(18110195-18110281)
chr4 (46-90)||(15651803-15651847)
chr4 (213-269)||(15821786-15821842)
chr4 (183-265)||(38817701-38817782)
chr4 (183-270)||(3356069-3356156)
chr4 (20-74)||(19374178-19374232)
chr4 (23-68)||(2677846-2677891)
chr4 (183-269)||(5871481-5871567)
chr4 (23-68)||(15815854-15815899)
chr4 (23-68)||(17299377-17299422)
chr4 (23-68)||(18110467-18110512)
chr4 (23-68)||(38817470-38817515)
chr4 (22-74)||(9538792-9538844)
chr4 (18-74)||(32637314-32637370)
chr4 (183-244)||(17299131-17299193)
chr4 (20-90)||(19363239-19363309)
chr4 (23-68)||(4675373-4675418)
chr4 (23-68)||(5871250-5871295)
chr4 (213-268)||(15816115-15816169)
chr4 (23-68)||(26532447-26532492)
chr4 (25-68)||(3356342-3356385)
chr4 (104-163)||(15462481-15462540)
chr4 (23-68)||(18163995-18164040)
chr4 (23-68)||(20244770-20244815)
chr4 (182-246)||(5523968-5524031)
chr4 (213-253)||(19374408-19374448)
chr4 (32-72)||(35224513-35224553)
[»] scaffold0017 (2 HSPs)
scaffold0017 (165-290)||(128539-128663)
scaffold0017 (18-88)||(128327-128397)
[»] chr1 (34 HSPs)
chr1 (104-290)||(43801496-43801687)
chr1 (104-290)||(19705605-19705796)
chr1 (104-290)||(28133847-28134045)
chr1 (182-290)||(22613549-22613655)
chr1 (158-267)||(35936358-35936466)
chr1 (182-290)||(28145331-28145438)
chr1 (19-84)||(28134128-28134193)
chr1 (18-86)||(35936155-35936223)
chr1 (18-82)||(43801772-43801836)
chr1 (182-290)||(47666617-47666725)
chr1 (19-82)||(47666892-47666955)
chr1 (18-90)||(636802-636874)
chr1 (182-290)||(8728698-8728805)
chr1 (183-271)||(14482954-14483042)
chr1 (183-270)||(33262848-33262935)
chr1 (183-270)||(33283007-33283094)
chr1 (183-269)||(20778797-20778884)
chr1 (183-270)||(20390392-20390479)
chr1 (183-268)||(22669411-22669496)
chr1 (183-270)||(22239876-22239963)
chr1 (23-68)||(9456949-9456994)
chr1 (23-68)||(9461046-9461091)
chr1 (23-68)||(20779069-20779114)
chr1 (23-68)||(22669681-22669726)
chr1 (23-68)||(33283280-33283325)
chr1 (23-68)||(42816413-42816458)
chr1 (23-68)||(14482723-14482768)
chr1 (27-68)||(20390663-20390704)
chr1 (213-271)||(9457210-9457267)
chr1 (213-271)||(9461307-9461364)
chr1 (18-53)||(22613322-22613357)
chr1 (104-154)||(22613459-22613509)
chr1 (23-72)||(9916012-9916060)
chr1 (213-268)||(42816143-42816197)
[»] scaffold0037 (2 HSPs)
scaffold0037 (182-290)||(38702-38808)
scaffold0037 (104-162)||(38848-38906)
[»] scaffold0686 (2 HSPs)
scaffold0686 (158-292)||(7643-7775)
scaffold0686 (19-78)||(7925-7984)
[»] scaffold0112 (2 HSPs)
scaffold0112 (104-290)||(1163-1362)
scaffold0112 (19-82)||(1015-1078)
[»] scaffold0069 (2 HSPs)
scaffold0069 (104-292)||(206-390)
scaffold0069 (19-82)||(58-121)
[»] scaffold0001 (2 HSPs)
scaffold0001 (19-82)||(138115-138178)
scaffold0001 (182-290)||(137827-137933)
[»] scaffold0389 (2 HSPs)
scaffold0389 (183-272)||(1227-1314)
scaffold0389 (19-82)||(994-1057)
[»] scaffold0022 (2 HSPs)
scaffold0022 (182-291)||(73326-73434)
scaffold0022 (19-82)||(73601-73664)
[»] scaffold1849 (1 HSPs)
scaffold1849 (183-269)||(176-263)
[»] scaffold0466 (2 HSPs)
scaffold0466 (18-74)||(10300-10356)
scaffold0466 (182-291)||(10037-10143)
[»] scaffold0264 (2 HSPs)
scaffold0264 (183-269)||(2828-2915)
scaffold0264 (23-68)||(3099-3144)
[»] scaffold0193 (1 HSPs)
scaffold0193 (183-270)||(32304-32391)
[»] scaffold0086 (1 HSPs)
scaffold0086 (20-74)||(54597-54651)
[»] scaffold0111 (2 HSPs)
scaffold0111 (21-74)||(27373-27426)
scaffold0111 (180-246)||(27571-27636)
[»] scaffold0028 (2 HSPs)
scaffold0028 (23-68)||(120563-120608)
scaffold0028 (213-268)||(120824-120878)
[»] scaffold0018 (1 HSPs)
scaffold0018 (213-272)||(197208-197266)
[»] scaffold0019 (1 HSPs)
scaffold0019 (183-270)||(18614-18702)
[»] scaffold0023 (1 HSPs)
scaffold0023 (20-74)||(108540-108594)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 104 - 304
Target Start/End: Complemental strand, 18258445 - 18258245
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacacttgaggtaacaatcgaatcactga 203  Q
    |||| ||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18258445 cttgttagaggctttgctgcttgctgcttgctttgttgtgattgtgattcccgtttccagctttcagattccacacttgagataacaatcgaatcactga 18258346  T
Q  204 ttcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttcacactttccccttt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18258345 ttcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgatttttcttcacactttccccttt 18258246  T
Q  304 g 304  Q
    |    
T  18258245 g 18258245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 34129607 - 34129747
Alignment:
Q  151 ttcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 249  Q
    |||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34129607 ttccagtttccagctttcagattccacacttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 34129706  T
Q  250 ttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34129707 ttatccgctgcttattctgttttgaattcgattttccttca 34129747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 19231910 - 19232044
Alignment:
Q  158 ttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccg 256  Q
    |||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19231910 ttccagctttcagatttcacacttcgaggtaacaattgaatcagtgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccg 19232009  T
Q  257 ctgcttattctgttttgaattcgattttccttcac 291  Q
    |||||||||||| | ||||||||||||||||||||    
T  19232010 ctgcttattctgatctgaattcgattttccttcac 19232044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 10666386 - 10666192
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattc-------ccgtttccagctttcagattccacactt-gaggtaacaatcga 195  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||       | |||||||||||| ||||||||||||| |||||||||||| |    
T  10666386 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattctagtatccagtttccagcttttagattccacacttcgaggtaacaatcaa 10666287  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    || | ||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||    
T  10666286 ataattgattcatgtgtaattcgtaatgatccaaggaaagaaaatcaaaattttttattcgctgcttattctgttttgaattcgattttccttca 10666192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 47166182 - 47165996
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcga 195  Q
    |||||||||||||||||||||||||       ||| |||||| |||||||| ||||||||       |||||||||||||||||| |||||||||||||     
T  47166182 cttgctagaggctttgctgcttgct-------ttgttgtgatcgtgattccagtttccagtctacaactttcagattccacacttcgaggtaacaatcgg 47166090  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  47166089 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaaattttatcccctgcttattctattttgaattcgattttccttca 47165996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 28131543 - 28131704
Alignment:
Q  123 cttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacacttgag-gtaacaatcgaatcactgattcatgtgtaattcgtaa 221  Q
    |||||||||||||||| |||||| ||||||||       |||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||    
T  28131543 cttgctagaggctttgttgtgatcgtgattcc-------agctttcagattccacacttcaaagtaacaatcgaatcattgattcatgtgtaattcgtaa 28131635  T
Q  222 tgatccaaggaaagaaaatcgaaaaattttatccgctgc-ttattctgttttgaattcgattttccttca 290  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28131636 tgatccaaggaaagaaaatcg-aaaattttatccgctgctttattctgttttgaatttgattttccttca 28131704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 41680291 - 41680197
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaat 276  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41680291 gaggtaagaatcgaatcacggattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttctgaat 41680197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 18258595 - 18258523
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18258595 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 18258523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 8466063 - 8466169
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg-aattcga 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||   ||| |||||||||||||||||  || || ||||    
T  8466063 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgattcaaggaaagaaaattgaaa---tttttccgctgcttattctgtaatgtaaatcga 8466159  T
Q  281 ttttccttca 290  Q
    ||||||||||    
T  8466160 ttttccttca 8466169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 41680437 - 41680367
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  41680437 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgttgaagtttgaggttgtacgttt 41680367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 34129405 - 34129476
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||    
T  34129405 cttctgacttgcagagcacacaaggagttctataaatagaatcctatttctgaagtttgaggttgcacgttt 34129476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 8465835 - 8465894
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8465835 tgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 8465894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 19231720 - 19231791
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  19231720 cttctgacttacagagcacacaaggagttctataaatagaaccctagtgctaaagtttgatgttacacgttt 19231791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 47166330 - 47166263
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||    
T  47166330 cttctgacttgcagagcacatgaggagttctataaatagaaccctagtgctaaagtttgaggttgcac 47166263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10666535 - 10666479
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10666535 acttctgacttgcagagcacactaggagttctataaatagaaccctagtgctgaagt 10666479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 42148586 - 42148486
Alignment:
Q  171 attccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    ||||||||||| |||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||| |||||| |||| ||||||  ||||||||    
T  42148586 attccacacttcgaggtaacaatcgaatcattgattcttgtcaaattcgtaatgatccaaggaaagaaaattgaaaaaatttattccgctatttattctg 42148487  T
Q  269 t 269  Q
    |    
T  42148486 t 42148486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 12188854 - 12188767
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  12188854 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 12188767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 19860181 - 19860268
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||| | |||  |||||||||||||||||    
T  19860181 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaatattttattccgctgcttattctgt 19860268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 15730817 - 15730904
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| || |||||||||||||||    
T  15730817 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattctgctgcttattctgtt 15730904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 48807754 - 48807667
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  48807754 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 48807667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 28131393 - 28131465
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||| |||||||| |||||| | || |||||||||||||||||||||||||||||||||  |||| |||||||    
T  28131393 acttttgacttgctgagcacgctagaagttctataaatagaaccctagtgctgaagtttttggttacacgttt 28131465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 2205385 - 2205430
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  2205385 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 2205430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 18138807 - 18138762
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  18138807 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 18138762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 18400937 - 18400982
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  18400937 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 18400982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 18407921 - 18407966
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  18407921 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 18407966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 18138544 - 18138487
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttt 271  Q
    ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||    
T  18138544 aattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgttt 18138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24442847 - 24442791
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||||| || ||||||  ||||||||||||||||||||||| ||||||||||    
T  24442847 acttctgacttccatagcacattaggagttctataaatagaacccttgtgctgaagt 24442791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 19392694 - 19392631
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaa 245  Q
    ||||| |||||| |||||||||||||| |  ||||||||| |||||||||||||||||| ||||    
T  19392694 gaggtcacaatcaaatcactgattcatatcaaattcgtaaagatccaaggaaagaaaattgaaa 19392631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 19389587 - 19389657
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatttta 252  Q
    |||||||||||   |||| ||||||||||  |||||||||| ||| ||||||| |||||||||||||||||    
T  19389587 gaggtaacaatttcatcattgattcatgtcaaattcgtaattatcaaaggaaacaaaatcgaaaaatttta 19389657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19392900 - 19392846
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaa 72  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||| ||| ||||    
T  19392900 acttctgacttgtagagcacactaggtgttctataaatagaacccttgtgatgaa 19392846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 2205646 - 2205700
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||    
T  2205646 aattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctg 2205700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 15730586 - 15730631
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  15730586 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 15730631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 48807965 - 48807921
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtg 67  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||    
T  48807965 tgacttgcaaagcacataaggagttctataaatagaaacctagtg 48807921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 18257038 - 18256975
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    |||||||||||||||| |||| |||||||||| |||||||||| | |||||  |||| ||||||    
T  18257038 cttctgacttgcagagaacactaggagttctagaaatagaaccattgtgctacagttagaggtt 18256975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 30255203 - 30255289
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    ||||||||||| |||||||| |||| ||   ||||||||||||||||||||||| ||||||   ||||||| ||||||||||||| ||||    
T  30255203 aggtaacaatctaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg---aattttattccgctgcttattatgtt 30255289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 19389377 - 19389423
Alignment:
Q  22 ctgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| ||||||| ||| |||||||||||||||||||| ||||    
T  19389377 ctgacttgctgagcacataagtagttctataaatagaacccttgtgc 19389423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 30254971 - 30255016
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||||    
T  30254971 tgacttgcaaagcacataaggagttctataaatagaattctagtgc 30255016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 25844781 - 25844714
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattt 250  Q
    |||||||||||   ||||||||| |||||  ||||||||||||||||||||||| | ||| ||||||||    
T  25844781 gaggtaacaattctatcactgat-catgtcaaattcgtaatgatccaaggaaaggagatcaaaaaattt 25844714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 31189619 - 31189579
Alignment:
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcga 243  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  31189619 attcatgtcaaattcgtgatgatccaaggaaagaaaatcga 31189579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 31189844 - 31189788
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||| ||||||||| ||||||  | |||||||||||||||||||||  |||||||||    
T  31189844 acttgtgacttgcaaagcacagtaagagttctataaatagaacccttctgctgaagt 31189788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 8613893 - 8614080
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactg 202  Q
    |||||||||||||||||||||||||    |||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||     
T  8613893 cttgctagaggctttgctgcttgctgcttgctttgttgtgatcgtgattccagtttccagctttcagattccacacttcgaggtaacaatcggatcactt 8613992  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8613993 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 8614080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 5754341 - 5754155
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactg 202  Q
    |||||||||||||||||||||||||    |||||| |||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  5754341 cttgctagaggctttgctgcttgctgcttgctttgttgtgatcgtgattccaatttccagctttcagattccacacttcgaggtaacaatcggatcactg 5754242  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5754241 attcatgtgtaattcgtaatgatccaaggaaagaaaattg-aaatttttatccgctgcttattctgttttgaattcgattttccttca 5754155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 33317892 - 33318032
Alignment:
Q  151 ttcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 249  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33317892 ttccagttttcagctttcagattccacacttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattt 33317991  T
Q  250 ttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33317992 ttatccgctgcttattctgttttgaattcgattttccttca 33318032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 14075531 - 14075660
Alignment:
Q  161 cagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctg 259  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14075531 cagctttcagatttcacactttgaggtaacaatcgaatcactgattcatttgtaattcgtaatgatccaaggaaagaaaatc-taaaattttatccgctg 14075629  T
Q  260 cttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||    
T  14075630 cttattctgttttgaattcgattttccttca 14075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 18019059 - 18018953
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg-aattcga 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||  || || ||||    
T  18019059 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg---aattttttccgctgcttattctgtaatgtaaatcga 18018963  T
Q  281 ttttccttca 290  Q
    ||||||||||    
T  18018962 ttttccttca 18018953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33317697 - 33317768
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33317697 cttctgacttgcagagcacacaagaagttctataaatagaaccctattgctgaagtttgaggttgcacgttt 33317768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 8613753 - 8613816
Alignment:
Q  27 ttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8613753 ttgcagagcacacaaggagttctataaatagaaccctattgctgaagtttgaggttgcacgttt 8613816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14075312 - 14075375
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14075312 cttctgacttgcagaacacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 14075375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 11250622 - 11250710
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||  |||  ||||||||||||||||||    
T  11250622 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaatttttattccgctgcttattctgtt 11250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 18019300 - 18019236
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    |||||||||||||| ||||||||| |||||||||||||||||  |||||||| ||||||||||||    
T  18019300 acttctgacttgcatagcacacaaagagttctataaatagaatactagtgctaaagtttgaggtt 18019236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 27507586 - 27507500
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||    
T  27507586 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg-aaattttaatccgctgcttattctgt 27507500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 1585344 - 1585257
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| || |||||||||||||||    
T  1585344 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattctgctgcttattctgtt 1585257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 22859126 - 22859044
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctg 268  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||||    ||| ||||||||||||||||    
T  22859126 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcgaa----tttttccgctgcttattctg 22859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 27524800 - 27524714
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||  |||| ||   ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||    
T  27524800 aggtaacaatcgaatcacttgttcaagttccaattcgtaatgatccaaggaaagtaaatcg-aaattttaatccgctgcttattctgt 27524714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 19219352 - 19219406
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  19219352 ttctgacttgcagaacacacttggagttctataaatagaacccttgtgctgaagt 19219406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 16790126 - 16790212
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| || ||||||||||||||    
T  16790126 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattctgctgcttattctgt 16790212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22859357 - 22859312
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  22859357 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 22859312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 10358301 - 10358259
Alignment:
Q  204 ttcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaa 246  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  10358301 ttcatgtcgaattcgtaatgatccaaggaaagaaaatcgaaaa 10358259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 1585575 - 1585530
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  1585575 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 1585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 11250403 - 11250448
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  11250403 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 11250448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 16789897 - 16789942
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||    
T  16789897 tgacttgcaaagcatataaggagttctataaatagaaccctagtgc 16789942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27507816 - 27507771
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||    
T  27507816 tgacttgcaaagcacataaagagttctataaatagaaccctagtgc 27507771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27525030 - 27524985
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||    
T  27525030 tgacttgcaaagcacataaagagttctataaatagaaccctagtgc 27524985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 14075460 - 14075519
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag 163  Q
    ||||||||||||||||||||||| |    ||||||||||||| |||||||| ||||||||    
T  14075460 cttgctagaggctttgctgcttgttgcctgctttgctgtgatcgtgattccagtttccag 14075519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 21996862 - 21996911
Alignment:
Q  197 tcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaa 246  Q
    ||||| ||||||||  ||||| ||||||||||||||| ||||||||||||    
T  21996862 tcactaattcatgtcaaattcataatgatccaaggaatgaaaatcgaaaa 21996911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19734717 - 19734661
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||| ||||| ||||| ||| ||||||||||| ||||||||||| ||| ||||||    
T  19734717 acttcttacttggagagctcactaggagttctatgaatagaacccttgtgttgaagt 19734661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 7864758 - 7864572
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactg 202  Q
    |||||||||||||||||||||||||    |||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||     
T  7864758 cttgctagaggctttgctgcttgctgcttgctttgttgtgatcgtgattccagtttccagctttcagattccacacttcgaggtaacaatcggatcactt 7864659  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7864658 attcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgcttattctgttttgaattcgattttccttca 7864572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 9811010 - 9810870
Alignment:
Q  151 ttcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 249  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9811010 ttccagttttcagctttcagattccacacttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattt 9810911  T
Q  250 ttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9810910 ttatccgctgcttattctgttttgaattcgattttccttca 9810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 12703251 - 12703111
Alignment:
Q  151 ttcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 249  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  12703251 ttccagttttcagctttcagattccacacttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaaattt 12703152  T
Q  250 ttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12703151 ttatccgctgcttattctgttttgaattcgattttccttca 12703111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 12764266 - 12764126
Alignment:
Q  151 ttcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatt 249  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12764266 ttccagttttcagctttcagattccacacttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattt 12764167  T
Q  250 ttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12764166 ttatccgctgcttattctgttttgaattcgattttccttca 12764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 31097796 - 31097980
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcga 195  Q
    |||||||||||||||||||||||||       |||||||||| |||||||| ||||||||       ||||||| ||| || ||| ||||||||||||||    
T  31097796 cttgctagaggctttgctgcttgct-------ttgctgtgatcgtgattccggtttccagattccagctttcagtttc-acgcttcgaggtaacaatcga 31097887  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| || || ||||||||||||||    
T  31097888 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattt--tccgctgcttattctgtattaaaatcgattttccttca 31097980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 104 - 269
Target Start/End: Complemental strand, 25804707 - 25804532
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattc-----cacactt-gaggtaaca 190  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| ||||||||       ||||||| |||     ||||||| |||||||||    
T  25804707 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttccagattccagctttcagtttcagtttcacacttcgaggtaaca 25804608  T
Q  191 atcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||    
T  25804607 atcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaa---tttttccgctgcttattctgt 25804532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 291
Target Start/End: Original strand, 39428469 - 39428591
Alignment:
Q  169 agattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgc-ttattc 266  Q
    ||||||||||||| ||||||||||  ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  39428469 agattccacacttcgaggtaacaactgaatcactgatacttgtgtaattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgctttattc 39428567  T
Q  267 tgttttgaattcgattttccttcac 291  Q
    || ||  ||||||||||||||||||    
T  39428568 tg-ttacaattcgattttccttcac 39428591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 20942101 - 20942206
Alignment:
Q  184 ggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  || || |||| || ||||||||| || || |||||||    
T  20942101 ggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaagaaagaaaatcgaattatatt-tccgttgtttattctgtattaaaatcgattt 20942199  T
Q  284 tccttca 290  Q
    |||||||    
T  20942200 tccttca 20942206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 7864898 - 7864835
Alignment:
Q  27 ttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7864898 ttgcagagcacacaaggagttctataaatagaaccctattgctgaagtttgaggttgcacgttt 7864835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9811203 - 9811136
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  9811203 cttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcac 9811136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12703444 - 12703377
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  12703444 cttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcac 12703377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12764460 - 12764393
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  12764460 cttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcac 12764393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 25804855 - 25804792
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25804855 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaggtttgaggtt 25804792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 22942288 - 22942344
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaa 238  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22942288 gaggtaacaatcaaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaa 22942344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 20941859 - 20941922
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  20941859 cttctgacttgcatagcacacaaggagttctataaatataaccccagtgctgaagtttgaggtt 20941922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 31097648 - 31097711
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  31097648 cttctgacttgcataacacacaagaagttctataaatagaaccctagtgctgaagtttgaggtt 31097711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 39428270 - 39428326
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  39428270 acttctgacttgcagaacacacaaggagttctataaatagaaccctggtgctgaagt 39428326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 32962 - 33049
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  32962 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 33049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 24932544 - 24932457
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  24932544 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 24932457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 5098478 - 5098533
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  5098478 acttctgacttgcagagcacactaggagttctataaatagaa-cctagtgctgaagt 5098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 23546986 - 23547073
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    ||||||| |||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  23546986 aggtaactatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 23547073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 32732 - 32777
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  32732 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 32777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 39536015 - 39536068
Alignment:
Q  21 tctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||||| |||||||  |||||||||||||||||||||| ||||||||||    
T  39536015 tctgacttgcatagcacacttggagttctataaatagaacccttgtgctgaagt 39536068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 20942007 - 20942066
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag 163  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| ||||||||    
T  20942007 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttccag 20942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 12788900 - 12788839
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcga 243  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||    
T  12788900 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcga 12788839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 12789132 - 12789087
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  12789132 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 12789087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 23546755 - 23546800
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  23546755 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 23546800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24932775 - 24932730
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  24932775 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 24932730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 28719167 - 28719119
Alignment:
Q  27 ttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtt 75  Q
    |||||||||||||||| ||||||||||||||||| || ||| |||||||    
T  28719167 ttgcagagcacacaagtagttctataaatagaactcttgtgttgaagtt 28719119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 22658815 - 22658641
Alignment:
Q  123 cttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaa 214  Q
    |||||||||||||||||||||||||||||||| ||||||||       |||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  22658815 cttgctagaggctttgctgtgattgtgattccagtttccagattccagctttcagatttcacacttcgaggtaacaatcgaatcactcattcatgtgtaa 22658716  T
Q  215 ttcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  22658715 ttcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgcttattctgttctgaattcgattttccttca 22658641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 288
Target Start/End: Complemental strand, 2962249 - 2962058
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcga 195  Q
    ||||||||||||||||||||||| |    |||||| |||||| |||||||| ||||||||       |||||||||||||||||| |||||||||||||     
T  2962249 cttgctagaggctttgctgcttgttgcttgctttgttgtgatcgtgattccagtttccagttttcagctttcagattccacacttcgaggtaacaatcgg 2962150  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttcctt 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  2962149 atcactgattcatgtataattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgtttattctgttttgaatttgattttcctt 2962058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 6431887 - 6431993
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgatt 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||    
T  6431887 aggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgcttattctattttgaattcaatt 6431985  T
Q  283 ttccttca 290  Q
    ||||||||    
T  6431986 ttccttca 6431993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 8370490 - 8370384
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||  ||||||||||||||||| || || |||||    
T  8370490 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagaaaagaaaatcgaattattt--tccgctgcttattctgtattaaaatcgat 8370393  T
Q  282 tttccttca 290  Q
    |||||||||    
T  8370392 tttccttca 8370384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 26242100 - 26242206
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||| || || |||||    
T  26242100 gaggtaacagtcgagtcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattt--tctgctgcttattctgtattaaaatcgat 26242197  T
Q  282 tttccttca 290  Q
    |||||||||    
T  26242198 tttccttca 26242206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 26652761 - 26652690
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26652761 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctaaagtttgaggttgcacgttt 26652690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 21970311 - 21970473
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctt-----tcagattccacactt-gaggtaacaatcgaat 197  Q
    |||| ||||||||||||||||||||    ||||||||||||| ||||| || | |||||||||     |||| ||| |||||| ||||||||||||||||    
T  21970311 cttgatagaggctttgctgcttgctgcttgctttgctgtgatcgtgat-ccagattccagcttcaatctcagtttc-acacttcgaggtaacaatcgaat 21970408  T
Q  198 cactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttatt 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||    
T  21970409 cactgattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaa---tttttccgctgcttatt 21970473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 6431719 - 6431790
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6431719 cttctgacttgaagagcacacaaggagttctataaatagaaccctagtgctgaagtttgatgttgcacgttt 6431790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2962397 - 2962326
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2962397 cttctgacttgaagagcacataaggagttctataaatagaaccctattgctgaagtttgaggttgcacgttt 2962326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 22658964 - 22658897
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22658964 cttctgacttgtagagcacacaaggagttctataaatagaaccctaatgctgaagtttgaggttgcac 22658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 26241860 - 26241923
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26241860 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 26241923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 26652539 - 26652414
Alignment:
Q  165 tttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgctta 263  Q
    ||||||| | ||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| || ||||||||    
T  26652539 tttcagacttcacacttcgaagtaacaatcaaatcactgattcatgtgtaattcgtaatgatctaaggaaaaaaaatcgaaataattt-tctgctgctta 26652441  T
Q  264 ttctgttttgaattcgattttccttca 290  Q
    ||||||| |  | ||||||||||||||    
T  26652440 ttctgttattcaatcgattttccttca 26652414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 8370723 - 8370660
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8370723 cttctgacttgcataacacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 8370660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25612026 - 25612090
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  25612026 acttctgacttgcatagcacacaaggagttctataaatagaatcctagtgctaaagtttgaggtt 25612090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 21970165 - 21970221
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtt 75  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  21970165 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctaaagtt 21970221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 45533511 - 45533424
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  45533511 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 45533424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 21917738 - 21917827
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtttt 272  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  21917738 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtttt 21917827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 29561912 - 29561999
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  29561912 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 29561999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 27006755 - 27006673
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctg 268  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||||    ||| ||||||||||||||||    
T  27006755 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaa----tttttccgctgcttattctg 27006673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 27013898 - 27013816
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctg 268  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||||    ||| ||||||||||||||||    
T  27013898 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcgaa----tttttccgctgcttattctg 27013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 8781355 - 8781304
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  8781355 tgacttgcaaagcacacaagtagttctataaatagaacccttgtgctgaagt 8781304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 18836177 - 18836247
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||  |||||| |||||||    
T  18836177 ttctaacttgcagaacacacttggagttctataaatagaacccttgtgctgaagtcagaggttacacgttt 18836247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 22646819 - 22646906
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| |||||||||| |||||||    
T  22646819 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgctttttctgtt 22646906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21917508 - 21917553
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  21917508 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 21917553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22130078 - 22130033
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  22130078 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 22130033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27006986 - 27006941
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  27006986 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 27006941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27014129 - 27014084
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  27014129 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 27014084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 25612175 - 25612309
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgt------ttccagctttca------gattccacactt-gaggtaaca 190  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| ||      ||||||||||||      | || ||||||| |||||||||    
T  25612175 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttcgagttccagctttcagttttcgttttcacacttcgaggtaaca 25612274  T
Q  191 atcgaatcactgattcatgtgtaattcgtaatgat 225  Q
    ||||||||||| |||| ||| ||||||||||||||    
T  25612275 atcgaatcactaattcgtgtctaattcgtaatgat 25612309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 18836379 - 18836443
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaa 247  Q
    ||||||||| | ||||||||||| |||||  ||||| |||||||||||||||||||||| ||||||    
T  18836379 gaggtaacatttgaatcactgat-catgtcaaattcataatgatccaaggaaagaaaattgaaaaa 18836443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27879956 - 27879911
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||    
T  27879956 tgacttgcaaagcacataaggagttctataaatagaacgctagtgc 27879911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 28020137 - 28020092
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||    
T  28020137 tgacttgcaaagcacataaggagttctataaatagaacgctagtgc 28020092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 45533742 - 45533697
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  45533742 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 45533697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 37031532 - 37031465
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattt 250  Q
    |||||||||||   ||||||||| |||||  ||||||||||||||||||||||| ||||| ||||||||    
T  37031532 gaggtaacaattctatcactgat-catgttaaattcgtaatgatccaaggaaaggaaatcaaaaaattt 37031465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 35520795 - 35520763
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaa 245  Q
    ||||||||||||||||||||||| |||||||||    
T  35520795 aattcgtaatgatccaaggaaaggaaatcgaaa 35520763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 24228536 - 24228357
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacacttga-ggtaacaatcgaatcactg 202  Q
    |||||||||||||||||||||||||    |||||||| |||| ||||||||       || ||||||||| ||||||| | |||||||||||||||||||    
T  24228536 cttgctagaggctttgctgcttgctgcttgctttgctttgatcgtgattcc-------aggtttcagatttcacactttaaggtaacaatcgaatcactg 24228444  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24228443 attcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgcttattctgttttgtattcgattttccttca 24228357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 24228680 - 24228613
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24228680 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttacacgttt 24228613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 32739272 - 32739151
Alignment:
Q  167 tcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgc-ttat 264  Q
    |||||||||||| || |||||||||||||||||||| |||| |||||||||||| |||||  ||||||||||||||| ||||||||||||||||| ||||    
T  32739272 tcagattccacatttcgaggtaacaatcgaatcactaattcttgtgtaattcgtgatgatttaaggaaagaaaatcg-aaaattttatccgctgctttat 32739174  T
Q  265 tctgttttgaattcgattttcctt 288  Q
    |||  |||||||||||||||||||    
T  32739173 tct-atttgaattcgattttcctt 32739151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 24762003 - 24761885
Alignment:
Q  171 attccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatcc-gctgcttattctg 268  Q
    ||||||||||| | |||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| | |||  ||||||||    
T  24762003 attccacacttcgcggtaacaatcaaatcactgagtcatgtcaaattcgtaatgatccaaggaaagaaaatcgaaaaattttattcagctatttattctg 24761904  T
Q  269 ttttgaattcgattttccttcac 291  Q
    |    ||||||||||||||||||    
T  24761903 t----aattcgattttccttcac 24761885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 19617455 - 19617558
Alignment:
Q  168 cagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttatt 265  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||| |||| || |||| |||||    
T  19617455 cagattccacacttcgaggtaacgatcgaatcattgattcatgtcaaattcgtaatgatccaaggaaagaaaatcaaaaaaatttattctgctgtttatt 19617554  T
Q  266 ctgt 269  Q
    ||||    
T  19617555 ctgt 19617558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 32739466 - 32739394
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  32739466 acttttgacttgcatagcacactaggagttctacaaatagaaccctagtgctgaagttttaggttacacgttt 32739394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 24249271 - 24249184
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  24249271 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 24249184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24763144 - 24763088
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  24763144 acttttgacttgcaaagcacactaggagttctataaatagaaccctggtgctgaagt 24763088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 37443997 - 37444053
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  37443997 acttccgacttgcagagcacactaggagttctataaattgaacccttgtgctgaagt 37444053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24249501 - 24249456
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  24249501 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 24249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 30175210 - 30175255
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  30175210 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 30175255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 15341512 - 15341458
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||  |||||||||    
T  15341512 ttctgacttgcagaacacactaggaattctataaatagaacccttatgctgaagt 15341458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 30175471 - 30175503
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaa 245  Q
    ||||||||||||||||||||||| |||||||||    
T  30175471 aattcgtaatgatccaaggaaagtaaatcgaaa 30175503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 15316498 - 15316312
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacacttgag-gtaacaatcgaatcactg 202  Q
    ||||| ||||||||||||| |||||    |||||| |||||| |||||||| ||||||| |||||| ||||||||||| |  |||||||||| |||||||    
T  15316498 cttgcaagaggctttgctgattgctgcttgctttgttgtgatcgtgattccagtttccaactttcaaattccacacttcaaagtaacaatcggatcactg 15316399  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  15316398 attcatgtgtaattcgtaatgatccaaggaaagaaaattg-aaaatcttatccgttgcttattctgttttgaattcgattttccttca 15316312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 288
Target Start/End: Complemental strand, 25978048 - 25977856
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctt-------tcagattccacactt-gaggtaacaatcga 195  Q
    |||||||||||||||||||||| ||    ||||| ||||||| |||||||| |||| ||| ||       ||||||| ||||||| ||||||||||||||    
T  25978048 cttgctagaggctttgctgcttactgcttgctttactgtgatcgtgattccagttttcagtttccaactatcagatttcacacttcgaggtaacaatcga 25977949  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttcctt 288  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  25977948 atcactgattcatgtgtaattcgtaatgatctaaggaaagaaaatcgaaaaattttacctgctgcttattctgttttgaattcgattttcctt 25977856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 28089171 - 28089301
Alignment:
Q  161 cagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctg 259  Q
    ||||||||||||| ||||||| |||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28089171 cagctttcagatttcacacttcgaggtaacaatcaaagaactaattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctg 28089270  T
Q  260 cttattctgttttgaattcgattttccttca 290  Q
    |||||||||||||||||||||||||||||||    
T  28089271 cttattctgttttgaattcgattttccttca 28089301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 21399774 - 21399944
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattc------cacactt-gaggtaacaatcgaa 196  Q
    |||||||||||||||||||||||||    |||||||| |||| |||||||| ||||||||||||||| ||       ||||||| |||||||||||||||    
T  21399774 cttgctagaggctttgctgcttgctgcttgctttgctatgatcgtgattccggtttccagctttcagtttttagtttcacacttcgaggtaacaatcgaa 21399873  T
Q  197 tcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  21399874 tcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattt--tccgctgcttattctgt 21399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 15845758 - 15845655
Alignment:
Q  185 gtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgatttt 284  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||  |||| ||||||||    
T  15845758 gtaacaatcgaatcactgattcatgtgcaattcgtaatgatccaaggaaagaaaatcgaaatattt--tccgctgcttattctgtaatgaaatcgatttt 15845661  T
Q  285 ccttca 290  Q
    ||||||    
T  15845660 ccttca 15845655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 21035309 - 21035415
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||  ||||||||||||||||| || || |||||    
T  21035309 gaggtaacaatcgaatcactgattcatgtgtaattcataatgatccaaggaaagaaaatcgaattattt--tccgctgcttattctgtattaaaatcgat 21035406  T
Q  282 tttccttca 290  Q
    |||||||||    
T  21035407 tttccttca 21035415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 13330121 - 13330302
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattcca-------cactt-gaggtaa 188  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| ||||||||       ||||||| || ||       ||||| |||||||    
T  13330121 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttccagattccacctttcagttttcagaattaacacttcgaggtaa 13330220  T
Q  189 caatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||    
T  13330221 caatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaataattt-tcccctgcttattctgttt 13330302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25978198 - 25978126
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  25978198 acttctgacttgcagagcacacaaggagttctataaatagaaccctaatgctgaagtttgagattgcacgttt 25978126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 15316646 - 15316575
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  15316646 cttctgaattgcagagaacacaaggagttctataaatagaaccctagtgctgaactttgaggttgcatgttt 15316575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 15846006 - 15845943
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15846006 cttctgacttgcatagcacacaaggagttctataaagagaaccctagtgctgaagtttgaggtt 15845943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 21399626 - 21399689
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21399626 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttaaggtt 21399689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 28088945 - 28089016
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28088945 cttctgacttgcagaacaaacaacgagttctataaatagaaccatagtgctgaagtttgaggttgcacgttt 28089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 21035070 - 21035132
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21035070 cttctgacttgcatag-acacaaggagttctataaatagaatcctagtgctgaagtttgaggtt 21035132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 55428088 - 55428176
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttt 271  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||    
T  55428088 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgttt 55428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 12332262 - 12332349
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  12332262 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 12332349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 12300961 - 12301048
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||  ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  12300961 aggtaacaatcgaatcactggttctagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 12301048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 26817124 - 26817194
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||| ||| ||||||  |||||| |||||||    
T  26817124 ttctgacttacagaacacacaaggagttctatcaatagaacccttgtgttgaagtcagaggttacacgttt 26817194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 20147023 - 20146978
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  20147023 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 20146978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 12300743 - 12300788
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  12300743 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 12300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 12332044 - 12332089
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  12332044 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 12332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 14147849 - 14147905
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||| ||||||||  |||| ||||||||||| |||||| ||||||||||    
T  14147849 acttctgacttgtagagcacaataggatttctataaatacaacccttgtgctgaagt 14147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 13330000 - 13330035
Alignment:
Q  47 tctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    |||||||||||||||||||||||||||||| |||||    
T  13330000 tctataaatagaaccctagtgctgaagttttaggtt 13330035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 4471868 - 4471917
Alignment:
Q  195 aatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaa 245  Q
    |||||||||| |||||  ||||||||||||||||||||||| |||||||||    
T  4471868 aatcactgat-catgtcaaattcgtaatgatccaaggaaaggaaatcgaaa 4471917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 20146762 - 20146708
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    |||||||||||||||||||| || ||||||  |||||||| ||||||||||||||||    
T  20146762 aattcgtaatgatccaaggagagtaaatcg--aaattttattccgctgcttattctg 20146708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 55427854 - 55427899
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| ||||||||||||||| |||| ||||||||    
T  55427854 tgacttgcaaagcacataaggagttctataaaaagaaacctagtgc 55427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 288
Target Start/End: Complemental strand, 15651726 - 15651535
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcga 195  Q
    ||||||||||||||||||||||| |    |||||| |||||| |||||||| ||||||||       |||||||||||||||||| |||||||||||||     
T  15651726 cttgctagaggctttgctgcttgttgcttgctttgttgtgatcgtgattccagtttccagttttcagctttcagattccacacttcgaggtaacaatcgg 15651627  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttcctt 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  15651626 atcactgattcatgtataattcgtaatgatccaaggaaagaaaatcg-aaaattttatccgctgtttattctgttttgaatttgattttcctt 15651535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 290
Target Start/End: Original strand, 4547099 - 4547233
Alignment:
Q  156 gtttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatc 254  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||     
T  4547099 gtttccagctttcagatttcacatttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatcaaaggaaagaaaattgaaattttttatt 4547198  T
Q  255 cgctgcttattctgttttgaattcgattttccttca 290  Q
    ||||||||||||| || || ||||||||||||||||    
T  4547199 cgctgcttattctattatg-attcgattttccttca 4547233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 15462578 - 15462684
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt-tttgaattcga 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||  ||||| ||||    
T  15462578 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaaaaaaatcgaaatattt--tccgctgcttattctgtaattgaa-tcga 15462674  T
Q  281 ttttccttca 290  Q
    ||||||||||    
T  15462675 ttttccttca 15462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4546894 - 4546965
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgtt 89  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4546894 acttctgacttgcagagcacataaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgtt 4546965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 9488527 - 9488653
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactg 202  Q
    |||||||||||||||| ||||||||    ||||||||||||| ||||||||       |||||||||||||||||||| ||||||||||| |||||||||    
T  9488527 cttgctagaggctttgttgcttgctgcttgctttgctgtgatcgtgattcc-------agctttcagattccacacttcgaggtaacaattgaatcactg 9488619  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaaga 236  Q
    |||||| |||||||||||||||||||||||||||    
T  9488620 attcatatgtaattcgtaatgatccaaggaaaga 9488653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 28917007 - 28916923
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||||    
T  28917007 gaggtaacaatcgaatcactgattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaa---tttttccgctgcttattctgt 28916923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9488377 - 9488449
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  9488377 acttctgacttgcagagcacacaaagagttctataaatataaccctagtgctgaagtttgaggttgcacgttt 9488449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 34976570 - 34976690
Alignment:
Q  167 tcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttatt 265  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || ||||||||||    
T  34976570 tcagatttcacacttcgagataacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaggaaaatc-aaatatttt-tctgctgcttatt 34976667  T
Q  266 ctgttttgaattcgattttccttc 289  Q
    ||||| | || |||||||||||||    
T  34976668 ctgttat-aaatcgattttccttc 34976690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 15462333 - 15462396
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15462333 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 15462396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 34976384 - 34976444
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgag 79  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34976384 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgag 34976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 11483045 - 11482936
Alignment:
Q  182 gaggtaacaatcgaatcactgattca-tgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt--tttg-aatt 277  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    ||| |||||||||||||||||  |||| || |    
T  11483045 gaggtaacaatcgaatcactgattcaatttgtagttcgtaatgatccaaggaaagaaaatcgaa----tttttccgctgcttattctgttatttgaaaat 11482950  T
Q  278 cgattttccttcac 291  Q
    ||||||||||||||    
T  11482949 cgattttccttcac 11482936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 11483275 - 11483212
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  11483275 cttctgacttgcatagcacacaaggagttctataaataaaaccctagtgctaaagtttgaggtt 11483212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 28917245 - 28917182
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28917245 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctatagtttgaggtt 28917182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 30039784 - 30039664
Alignment:
Q  168 cagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattc 266  Q
    |||||||||||||| ||||||||||||||||||||||||| |||  ||||| |||| ||| ||||||||||||||||||  |||  ||||| | |||||     
T  30039784 cagattccacacttcgaggtaacaatcgaatcactgattcttgtcaaattcataataatcaaaggaaagaaaatcgaaatttttattccgcagtttattt 30039685  T
Q  267 tgttttgaattcgattttccttca 290  Q
    ||||   |||||||||||||||||    
T  30039684 tgtt---aattcgattttccttca 30039664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 11421816 - 11421872
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  11421816 acttctgacttgcagagcacactaggagttctataaatagaaccctcgtgctgaagt 11421872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 2678076 - 2678163
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  2678076 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 2678163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 26532677 - 26532764
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  26532677 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 26532764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 18164226 - 18164313
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  18164226 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 18164313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 30039975 - 30039919
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  30039975 acttttgacttgcagagcacactaggagttatataaatagaaccctagtgctgaagt 30039919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 4675188 - 4675101
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||| ||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  4675188 aggtaacaattgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 4675101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 20245002 - 20245089
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  20245002 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 20245089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 18110281 - 18110195
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||    
T  18110281 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgt 18110195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15651847 - 15651803
Alignment:
Q  46 ttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  15651847 ttctataaatagaaccctattgctgaagtttgaggttgcacgttt 15651803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 15821786 - 15821842
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  15821786 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 15821842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 38817701 - 38817782
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttatt 265  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  || |||| |||||||||||||    
T  38817701 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcg--aatttttttccgctgcttatt 38817782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 3356156 - 3356069
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||  |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  3356156 aggtaacaatcgaatcactacttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 3356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 19374178 - 19374232
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||    
T  19374178 ttctgacttgcagaacacgctaggagttctataaatagaacccttgtgctgaagt 19374232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 2677846 - 2677891
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  2677846 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 2677891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 5871481 - 5871567
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| |||||||||| ||||||    
T  5871481 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttgttctgt 5871567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 15815854 - 15815899
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  15815854 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 15815899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 17299422 - 17299377
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  17299422 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 17299377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 18110512 - 18110467
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  18110512 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 18110467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 38817470 - 38817515
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  38817470 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 38817515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 9538792 - 9538844
Alignment:
Q  22 ctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||||||||||    
T  9538792 ctgactttcagaacacacaagaagttctataaatagaacccttgtgctgaagt 9538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 32637314 - 32637370
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||| ||||||||||    
T  32637314 acttctgacttgcagagcatattaggagttctataaatataacccttgtgctgaagt 32637370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 17299193 - 17299131
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaa 244  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||||    
T  17299193 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaa 17299131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 19363239 - 19363309
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    ||||||| || ||| |||||  ||||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  19363239 ttctgacgtgtagaacacacttggagttctataaataaaacccttgtgctgaagtcagaggttgcacgttt 19363309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 4675418 - 4675373
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  4675418 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 4675373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 5871250 - 5871295
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  5871250 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 5871295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 15816115 - 15816169
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||    
T  15816115 aattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctg 15816169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 26532447 - 26532492
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||||    
T  26532447 tgacttgcaaagcacataaggagttctataaataaaaccctagtgc 26532492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 3356385 - 3356342
Alignment:
Q  25 acttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  3356385 acttgcaaagcacataaggagttctataaatagaaacctagtgc 3356342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 15462481 - 15462540
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag 163  Q
    |||||||||||||||||||||||||    |||| |||||||| |||||||| ||||||||    
T  15462481 cttgctagaggctttgctgcttgctgcttgcttggctgtgatcgtgattccggtttccag 15462540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 18163995 - 18164040
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||    
T  18163995 tgacttgcaaagcacatagggagttctataaatagaaacctagtgc 18164040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 20244770 - 20244815
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||| | |||||| |||||||||||||||||||| ||||||||    
T  20244770 tgacttgaaaagcacataaggagttctataaatagaaacctagtgc 20244815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 5524031 - 5523968
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaa 246  Q
    |||||||||||   ||||||||| |||||  |||||||||||||||||| |||| ||||||||||    
T  5524031 gaggtaacaattctatcactgat-catgtcaaattcgtaatgatccaagaaaaggaaatcgaaaa 5523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 19374408 - 19374448
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaattttat 253  Q
    |||| |||||||||||||||||| ||||||||| |||||||    
T  19374408 aatttgtaatgatccaaggaaaggaaatcgaaatattttat 19374448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 35224513 - 35224553
Alignment:
Q  32 gagcacacaaggagttctataaatagaaccctagtgctgaa 72  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  35224513 gagcacacaagtggttctataaatagaacccttgtgctgaa 35224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 128539 - 128663
Alignment:
Q  165 tttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgctta 263  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||| |||||||||    
T  128539 tttcagattccacacttcgaggtaacaatcgaatcactgattcatgtctaattcgtaatgatccaaggagagaaaatcg--aaattttattcgctgctta 128636  T
Q  264 ttctgttttgaattcgattttccttca 290  Q
    ||||||| | || ||||||||||||||    
T  128637 ttctgttgtaaactcgattttccttca 128663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 128327 - 128397
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgt 88  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  128327 acttctaacttgcagagcacataaggaattctataaatagaaccctagtgctgaagtttgaggttacacgt 128397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 43801687 - 43801496
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattcca------cactt-gaggtaacaatcgaa 196  Q
    |||||||||||||||||||||||||    |||||| |||||| |||||||| |||||||| || ||| || ||      ||||| |||||||||||||||    
T  43801687 cttgctagaggctttgctgcttgctgcttgctttgttgtgatcgtgattccggtttccagattccagttttcagtttcacacttcgaggtaacaatcgaa 43801588  T
Q  197 tcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||| |  || ||||||||||||||    
T  43801587 tcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattt--tccgctgcttattctgtatgaaaatcgattttccttca 43801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 19705796 - 19705605
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattccacactt-gaggtaacaatcga 195  Q
    ||||||||||||||||||||||| |    ||||||||||||| |||||||| ||||||||       ||||||| ||| |||||| ||| ||||||||||    
T  19705796 cttgctagaggctttgctgcttgttgcttgctttgctgtgatcgtgattccggtttccagattccagctttcagtttc-acacttcgagataacaatcga 19705698  T
Q  196 atcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg-aattcgattttccttca 290  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| |||||||||||||||||  || || ||||||||||||||    
T  19705697 atcactgattcatgtgtaatttgtaatgatccaaggaaagaaaatcgaaa---tttttccgctgcttattctgtaatgtaaatcgattttccttca 19705605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 28134045 - 28133847
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattc-----cacactt-gaggtaaca 190  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||| | ||||||||       ||||||  |||     ||||||| |||||||||    
T  28134045 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgatttcggtttccagattccagctttcaatttcagtttcacacttcgaggtaaca 28133946  T
Q  191 atcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg-aattcgattttccttc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||  || || |||||||||||||    
T  28133945 atcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg--aaattttttccgctgcttattctgtaatgtaaatcgattttccttc 28133848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 22613549 - 22613655
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgtttt-gaattcga 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| | ||||||||||||||||||||  || ||||    
T  22613549 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg---aattatttccgctgcttattctgttttaaaaatcga 22613645  T
Q  281 ttttccttca 290  Q
    ||||||||||    
T  22613646 ttttccttca 22613655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 35936358 - 35936466
Alignment:
Q  158 ttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccg 256  Q
    |||||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  35936358 ttccagctttcagatttcacacttcgaagtcacaattgaatcactgattcatgtgtaattcgtaatgatccaaggaaaaaaaatcgaaaa--tttatccg 35936455  T
Q  257 ctgcttattct 267  Q
    ||| |||||||    
T  35936456 ctggttattct 35936466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 28145438 - 28145331
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg-aattcga 280  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||||  || || ||||    
T  28145438 gaggtaacaatcaaatcactgatttatgtgtaattcgtaatgatccaaggaaagaaaatcg--aaattttttgcgctgcttattctgtaatgtaaatcga 28145341  T
Q  281 ttttccttca 290  Q
    ||||||||||    
T  28145340 ttttccttca 28145331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 28134193 - 28134128
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgc 84  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28134193 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgacgttgc 28134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35936155 - 35936223
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcac 86  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  35936155 acttctgacttgcaaagcacacaaggagttctataaatagaaccatagtgctgaagtttgatgttgcac 35936223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43801836 - 43801772
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43801836 acttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaaatttgaggtt 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 47666725 - 47666617
Alignment:
Q  182 gaggtaacaatcgaatcactgattca-tgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt--tttg-aatt 277  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    ||| |||||||||||||||||  |||| || |    
T  47666725 gaggtaacaatcgaatcactgattcaatgtgtagttcgtaatgatccaaggaaagaaaatcgaa----tttttccgctgcttattctgtaatttgaaaat 47666630  T
Q  278 cgattttccttca 290  Q
    |||||||||||||    
T  47666629 cgattttccttca 47666617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 47666955 - 47666892
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47666955 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctaaagtttgaggtt 47666892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 636802 - 636874
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggttgcacgttt 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||| |||||||    
T  636802 acttctgacttgcagagcacactaggagttctataaatagaaccttagtgctgaagtttttggttacacgttt 636874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 8728698 - 8728805
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    ||||||||||| |||| ||||||||||||| ||||| | ||||||||||| ||||||||||||||||||  | || ||| || | |||||| ||||||||    
T  8728698 gaggtaacaattgaattactgattcatgtgaaattcttgatgatccaagggaagaaaatcgaaaaatttatttcgttgcataat-tgtttttaattcgat 8728796  T
Q  282 tttccttca 290  Q
    |||||||||    
T  8728797 tttccttca 8728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 14482954 - 14483042
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttt 271  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||    
T  14482954 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgttt 14483042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 33262935 - 33262848
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| |||||||||  || | ||||||||||||||||||    
T  33262935 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaatgttat-tccgctgcttattctgtt 33262848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 33283094 - 33283007
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| |||||||||  || | ||||||||||||||||||    
T  33283094 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaatgttat-tccgctgcttattctgtt 33283007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 20778884 - 20778797
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||| || |||  |||||||||||||||||    
T  20778884 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgagaattttattccgctgcttattctgt 20778797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 20390479 - 20390392
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  20390479 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 20390392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 22669496 - 22669411
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctg 268  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||||| |||||| ||  |||| ||||||||||||||||    
T  22669496 aggtaacaatcgaatcactggttcaagtcttaattcgtaatgatccaaggaaagtaaatcg-aattttttttccgctgcttattctg 22669411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 22239963 - 22239876
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    ||||||| |||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  22239963 aggtaacgatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 22239876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 9456949 - 9456994
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  9456949 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 9456994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 9461046 - 9461091
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  9461046 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 9461091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 20779114 - 20779069
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  20779114 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 20779069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22669726 - 22669681
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  22669726 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 22669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 33283325 - 33283280
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  33283325 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 33283280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 42816458 - 42816413
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  42816458 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 42816413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 14482723 - 14482768
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  14482723 tgacttgcaaagcacataaggagttctataaatagaaacctagtgc 14482768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 20390704 - 20390663
Alignment:
Q  27 ttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  20390704 ttgcaaagcacataaggagttctataaatagaaccctagtgc 20390663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 9457210 - 9457267
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttt 271  Q
    ||||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||||    
T  9457210 aattcgtaatgatccaaggaaagtaaatcg--aaatttaattccgctgcttattctgttt 9457267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 9461307 - 9461364
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttt 271  Q
    ||||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||||    
T  9461307 aattcgtaatgatccaaggaaagtaaatcg--aaatttaattccgctgcttattctgttt 9461364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 22613322 - 22613357
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataa 53  Q
    |||||||||||||| |||||||||||||||||||||    
T  22613322 acttctgacttgcatagcacacaaggagttctataa 22613357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 22613459 - 22613509
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcc 154  Q
    |||||||||||||||||||||||||    ||||||||||||| ||||||||    
T  22613459 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattcc 22613509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 9916060 - 9916012
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaa 72  Q
    ||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  9916060 tgacttgcagagcacacaagtggttctat-aatagaacccttgtgctgaa 9916012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 42816197 - 42816143
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    |||||||||||||||||||| || ||||||  |||||||| ||||||||||||||||    
T  42816197 aattcgtaatgatccaaggagagtaaatcg--aaattttattccgctgcttattctg 42816143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 38808 - 38702
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||  |||| |||||    
T  38808 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaa--tttttccgctgcttattctgtaatgaaatcgat 38711  T
Q  282 tttccttca 290  Q
    |||||||||    
T  38710 tttccttca 38702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 38906 - 38848
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttcca 162  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| |||||||    
T  38906 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttcca 38848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 7775 - 7643
Alignment:
Q  158 ttccagctttcagattccacactt-gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccg 256  Q
    |||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||    
T  7775 ttccagttttcagtttc-acacttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattt--tccg 7679  T
Q  257 ctgcttattctgttttgaattcgattttccttcaca 292  Q
    ||||||||||| | || || ||||||||||||||||    
T  7678 ctgcttattctatattaaaatcgattttccttcaca 7643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 7984 - 7925
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttga 78  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  7984 cttctgacttgcatagcatacaaggagttctataaatagaaccctagtgctgaagtttga 7925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 1163 - 1362
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccag-------ctttcagattcca------cactt-gaggtaac 189  Q
    |||||||||||||||||||||||||    ||||||||||||| |||||||| ||||||||       ||||||| || ||      ||||| ||||||||    
T  1163 cttgctagaggctttgctgcttgctgcttgctttgctgtgatcgtgattccggtttccagattccagctttcagttttcagtttcacacttcgaggtaac 1262  T
Q  190 aatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttg--aattcgattttcct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||||||||||  || |||||||||||    
T  1263 aatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcg---aattatttccgctgcttattctgttttgtaaaatcgattttcct 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 1015 - 1078
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1015 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctaaagtttgaggtt 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 292
Target Start/End: Original strand, 206 - 390
Alignment:
Q  104 cttgctagaggctttgctgcttgctagaggctttgctgtgattgtgattcccgtttccagctttcagattccacactt-gaggtaacaatcgaatcactg 202  Q
    |||| ||||||||||||||||||||    ||||||||||||| ||||| || | |||||||||| || ||| |||||| ||||||||||||| |||||||    
T  206 cttgatagaggctttgctgcttgctgcttgctttgctgtgatcgtgat-ccagattccagcttt-agtttc-acacttcgaggtaacaatcggatcactg 302  T
Q  203 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt--tttgaattcgattttccttcaca 292  Q
    ||||| ||||| |||||||||||||||||||||||||||||||  |||    |||||||||||||||  || ||| ||||||||||||||||    
T  303 attcacgtgtagttcgtaatgatccaaggaaagaaaatcgaaattttt----cgctgcttattctgtaattagaaatcgattttccttcaca 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 58 - 121
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  58 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctaaagtttgaggtt 121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 138178 - 138115
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  138178 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 138115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 137933 - 137827
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgat 281  Q
    ||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||||  ||||||||||||||| |  |||| |||||    
T  137933 gaggtaacaatcgaaccactgattcttgtgtaattcaatatgatccaaggaaagaaaatcgaaatattt--tccgctgcttattctataatgaaatcgat 137836  T
Q  282 tttccttca 290  Q
    |||||||||    
T  137835 tttccttca 137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 1227 - 1314
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgtttt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| | || ||||||||||||||||||||    
T  1227 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatcc-aggaaggaaaatcg-aaattattttccgctgcttattctgtttt 1314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 994 - 1057
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  994 cttctgacttgcatagcacacaaggagttctataaatagaaccctagtgctaaagtttgaggtt 1057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 73434 - 73326
Alignment:
Q  182 gaggtaacaatcgaatcactgattca-tgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt--tttgaattc 278  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||    ||| |||||| ||||||||||  |||||| ||    
T  73434 gaggtaacaatcgaatcactgattcaatgtgtagttcgtaatgatccaaggaatgaaaatcgaa----tttttccgctacttattctgtaatttgaaatc 73339  T
Q  279 gattttccttcac 291  Q
    |||||||||||||    
T  73338 gattttccttcac 73326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 73664 - 73601
Alignment:
Q  19 cttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagtttgaggtt 82  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  73664 cttctgacttgcatagcacacaaggagttctataaataaaaccctagtgctaaagtttgaggtt 73601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1849 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 176 - 263
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  176 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10356 - 10300
Alignment:
Q  18 acttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  10356 acttctgacttgcaaagcacactaggagttctataagtagaaccctagtgctgaagt 10300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 10143 - 10037
Alignment:
Q  182 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgttttgaattcga 280  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||| ||||  ||||| |||  ||||| |||| || |||||||||    |||||||    
T  10143 gaggtaacaatcgaatcactgattcttgtcaaattcgtaatgatccaaagaaatgaaatcaaaattttttattccgttgtttattctgt----aattcga 10048  T
Q  281 ttttccttcac 291  Q
    |||||||||||    
T  10047 ttttccttcac 10037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 2915 - 2828
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 269  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| |||||||||| |||  || ||||||||||||||    
T  2915 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattctgctgcttattctgt 2828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 3144 - 3099
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||    
T  3144 tgacttgcaaagcacataaggagttatataaatagaaccctagtgc 3099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 32391 - 32304
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  32391 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 32304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 54597 - 54651
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||    
T  54597 ttctgacttgcaaagcacactaggatttctataaatagaaccctagtgttgaagt 54651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 27373 - 27426
Alignment:
Q  21 tctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||||||||||||| || | |||||||||||||||||| ||||||||||    
T  27373 tctgacttgcagagcacactagaatttctataaatagaacccttgtgctgaagt 27426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 27571 - 27636
Alignment:
Q  180 ttgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaa 246  Q
    ||||||||||| || | |||||||||||| |  |||| || ||||||||||||||||||||||||||    
T  27571 ttgaggtaacattc-attcactgattcatatcaaatttgtgatgatccaaggaaagaaaatcgaaaa 27636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 120563 - 120608
Alignment:
Q  23 tgacttgcagagcacacaaggagttctataaatagaaccctagtgc 68  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  120563 tgacttgcaaagcacataaggagttctataaatagaaccctagtgc 120608  T

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Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 120824 - 120878
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctg 268  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||||| ||||||    
T  120824 aattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgctcattctg 120878  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 197266 - 197208
Alignment:
Q  213 aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtttt 272  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  197266 aattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtttt 197208  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 18702 - 18614
Alignment:
Q  183 aggtaacaatcgaatcactgattcatgtgt--aattcgtaatgatccaaggaaagaaaatcgaaaaatttta-tccgctgcttattctgtt 270  Q
    |||||||||||||||||||  |||| ||    ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  18702 aggtaacaatcgaatcactagttcaagttctaaattcgtaatgatccaaggaaagtaaatcg--aaattttattccgctgcttattctgtt 18614  T

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Target: scaffold0023 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 108594 - 108540
Alignment:
Q  20 ttctgacttgcagagcacacaaggagttctataaatagaaccctagtgctgaagt 74  Q
    ||||||||| || | |||| |||||||||||||||||||||||| ||||||||||    
T  108594 ttctgacttacataacacataaggagttctataaatagaacccttgtgctgaagt 108540  T

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