View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_18 (Length: 270)
Name: NF19747_low_18
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_18 |
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| [»] scaffold0991 (3 HSPs) |
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Alignment Details
Target: scaffold0991 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2106 - 1855
Alignment:
| Q |
1 |
attgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2106 |
attgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgttttt |
2007 |
T |
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| Q |
101 |
atgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2006 |
atgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtctgagtgtagagtctaagattttagttgaattatt |
1907 |
T |
|
| Q |
201 |
gttttaggtgaattagttatgtgcagtgtttgttttgaagtggggtgtttag |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1906 |
gttttaggtgaattagttatgtgcagtgtttgttttaaagtggggtgtttag |
1855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 1962 - 1836
Alignment:
| Q |
8 |
ttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgtttttatgtggg |
107 |
Q |
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||||||| ||||| |||||||||||| || ||||||||||||| |||||| | |||||| |||||||||||||| || ||||||||||| | ||||| |
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| T |
1962 |
ttggtaatatatttaatttgtctgagtgtagagtctaagattttagttgaattattgttttaggtgaattagttatgtgcagtgtttgttttaaagtggg |
1863 |
T |
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| Q |
108 |
gtgtttaaggtctaagattttacttga |
134 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
1862 |
gtgtttagggtctaagattttacttga |
1836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 2127 - 1993
Alignment:
| Q |
117 |
gtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattattgttttaggtgaattag |
216 |
Q |
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||||| |||||||||||| | |||| ||||||| ||||| ||||||| |||| || ||||||||||||| |||||| | |||||| |||||||||| |
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| T |
2127 |
gtctaggattttacttgagttattgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattag |
2028 |
T |
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| Q |
217 |
ttatgtgcagtgtttgttttgaagtggggtgttta |
251 |
Q |
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|||| || ||||||||||| | |||||||||||| |
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| T |
2027 |
ttatatggggtgtttgtttttatgtggggtgttta |
1993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4833987 - 4834238
Alignment:
| Q |
1 |
attgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4833987 |
attgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgttttt |
4834086 |
T |
|
| Q |
101 |
atgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4834087 |
atgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtctgagtgtagagtctaagattttagttgaattatt |
4834186 |
T |
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| Q |
201 |
gttttaggtgaattagttatgtgcagtgtttgttttgaagtggggtgtttag |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4834187 |
gttttaggtgaattagttatgtgcagtgtttgttttaaagtggggtgtttag |
4834238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 4822284 - 4822409
Alignment:
| Q |
98 |
tttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaatt |
197 |
Q |
| |
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|||| ||||| |||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||| |||| ||| ||||||| |||| ||||||| |
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| T |
4822284 |
tttacgtgggttgtttagggtctaagatttcacttgaattattgtttttggtaatatgtttaatttgtctgagtttagggtctaaggttttgcttgaatt |
4822383 |
T |
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| Q |
198 |
attgttttaggtgaattagttatgtg |
223 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
4822384 |
attgtttttggtgaattagttatgtg |
4822409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 4834131 - 4834257
Alignment:
| Q |
8 |
ttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgtttgtttttatgtggg |
107 |
Q |
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||||||| ||||| |||||||||||| || ||||||||||||| |||||| | |||||| |||||||||||||| || ||||||||||| | ||||| |
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| T |
4834131 |
ttggtaatatatttaatttgtctgagtgtagagtctaagattttagttgaattattgttttaggtgaattagttatgtgcagtgtttgttttaaagtggg |
4834230 |
T |
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| Q |
108 |
gtgtttaaggtctaagattttacttga |
134 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
4834231 |
gtgtttagggtctaagattttacttga |
4834257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 4833966 - 4834100
Alignment:
| Q |
117 |
gtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattattgttttaggtgaattag |
216 |
Q |
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||||| |||||||||||| | |||| ||||||| ||||| ||||||| |||| || ||||||||||||| |||||| | |||||| |||||||||| |
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| T |
4833966 |
gtctaggattttacttgagttattgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattag |
4834065 |
T |
|
| Q |
217 |
ttatgtgcagtgtttgttttgaagtggggtgttta |
251 |
Q |
| |
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|||| || ||||||||||| | |||||||||||| |
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| T |
4834066 |
ttatatggggtgtttgtttttatgtggggtgttta |
4834100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 4822346 - 4822417
Alignment:
| Q |
23 |
atttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattagttatatggggtgttt |
94 |
Q |
| |
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||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||||||| || ||||||| |
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| T |
4822346 |
atttgtctgagtttagggtctaaggttttgcttgaattattgtttttggtgaattagttatgtgtggtgttt |
4822417 |
T |
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