View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_20 (Length: 254)
Name: NF19747_low_20
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33861965 - 33862206
Alignment:
| Q |
1 |
gttgtcaattaatttctctctaatcatggcaaagatcatcaacaagatttgaaa--gtttctcagatatcttagtggggtgggggatctgtattaattag |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33861965 |
gttgtcaattaatttctctctaatcatggcaaagatcatcgacaagatttgaaatagtttctcagatatcttagtggggtggtggatctgtattaattag |
33862064 |
T |
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| Q |
99 |
ctacaaagatgcagatacagcgggtgattttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagcg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33862065 |
ctacaaagatgcagatacagcgggtgattttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagtg |
33862164 |
T |
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| Q |
199 |
gtttggagttttggactttgcttctcctcaagttcttagttc |
240 |
Q |
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| T |
33862165 |
gtttggagttttggactttgctcctcctcaagttcttagttc |
33862206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33918957 - 33918716
Alignment:
| Q |
1 |
gttgtcaattaatttctctctaatcatggcaaagatcatcaacaagatttgaaa--gtttctcagatatcttagtggggtgggggatctgtattaattag |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33918957 |
gttgtcaattaatttctctctaatcatggcaaagatcatcgacaagatttgaaatagtttctcagatatcttagtggggtggtggatctgtattaattag |
33918858 |
T |
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| Q |
99 |
ctacaaagatgcagatacagcgggtgattttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagcg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33918857 |
ctacaaagatgcagatacagcgggtgattttgattctagaaaatctaattatggttacataatgacttttgcatgataacccatttgggttggcctagtg |
33918758 |
T |
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| Q |
199 |
gtttggagttttggactttgcttctcctcaagttcttagttc |
240 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33918757 |
gtttggagttttggactttgctcctcctcaagttcttagttc |
33918716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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