View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_22 (Length: 236)
Name: NF19747_low_22
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 31367477 - 31367694
Alignment:
| Q |
15 |
aaataaattctcaggttcaaccaaattctcacacatatataaatatannnnnnnggtaactcacacgtatataaatatctataattataaggcttccaag |
114 |
Q |
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| T |
31367477 |
aaataaattctcaggttcaaccaaattctcacacatatataaatatttttttttggtaactcacacgtatataaatatctataattataaggcttccaag |
31367576 |
T |
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| Q |
115 |
tgctattttttcaaagaaagttttacttttctctattcggaaagggaaggaaaatgcagaagaattacataaagttatgatttaataacaaactatatat |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31367577 |
tgctattttttcaaagaatgttttacttttctctattcggaaagggaaggaaaatgcagaagaattacataaagttatgatttaataacaaac----tat |
31367672 |
T |
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| Q |
215 |
ttttcattcattttccactttt |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
31367673 |
ttttcattcattttccactttt |
31367694 |
T |
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