View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_24 (Length: 234)
Name: NF19747_low_24
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_24 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 2761581 - 2761801
Alignment:
| Q |
14 |
gaaggtacctttcatccgatcatgcaatgcttcttatttaagttgacagtgtatgaggtaactgacttgattttttcttgtgtcgatgtggccagaaatt |
113 |
Q |
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| T |
2761581 |
gaaggtacctttcatccgatcatgtaatgcttcttatttaagttgacagtgtatgagataactgacttgattttttcttgtgtcggtgtggccagaaatt |
2761680 |
T |
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| Q |
114 |
tggttctccataatacagctcaaagatgacgtattttcttagagcttcaaattaaagtaaattatttacttatcatccagcaataatcaagaaaagtgcg |
213 |
Q |
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| T |
2761681 |
tggttctccataatacagctcaaagatgacgtattttcttagagcttcaaattaaagtaaattatttatttatcatccagcaataatcaagaaaagtgtg |
2761780 |
T |
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| Q |
214 |
gattcaattcactgagtgact |
234 |
Q |
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| T |
2761781 |
gattcaattcactgagtgact |
2761801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 2821052 - 2821125
Alignment:
| Q |
65 |
tatgaggtaactgacttgattttttcttgtgtcgatgtggccagaaatttggttctccataatacagctcaaag |
138 |
Q |
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| T |
2821052 |
tatgagataactgacttgattgtttcttgtgtcaatgcggacagcaatttggttctccacgatacagctcaaag |
2821125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 2809771 - 2809828
Alignment:
| Q |
64 |
gtatgaggtaactgacttgattttttcttgtgtcgatgtggccagaaatttggttctc |
121 |
Q |
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| T |
2809771 |
gtatgagataactgacttgattgttttttgtgtcaatgcggacagaaatttggttctc |
2809828 |
T |
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