View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_25 (Length: 231)
Name: NF19747_low_25
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 7238301 - 7238504
Alignment:
| Q |
13 |
attattctcattcatgatgcaatgctacattctgttctgtatttactcctccacatatgttgtgaacttcctgatgttccatccactatctatggtttat |
112 |
Q |
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| T |
7238301 |
attattctcattcatgatgccatgctacattctgttctgtatttactcctccacatatgttgtgaacttcctgatgttccatccactatctatggttcat |
7238400 |
T |
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| Q |
113 |
gtgaaggggcgtggaactgttgccactggtcgtgttgaacaaggtactatcaaagttggtgaagaggttgagatactaggattgaaacaggtacacataa |
212 |
Q |
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| T |
7238401 |
gtgaaggggcgtggaactgttgccactggtcgtgttgaacaaggtactatcaaagttggtgaagaggttgagatactaggattgaaacaggtacacataa |
7238500 |
T |
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| Q |
213 |
aatt |
216 |
Q |
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|||| |
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| T |
7238501 |
aatt |
7238504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 216
Target Start/End: Complemental strand, 32406907 - 32406734
Alignment:
| Q |
43 |
tctgttctgtatttactcctccacatatgttgtgaacttcctgatgttccatccactatctatggtttatgtgaaggggcgtggaactgttgccactggt |
142 |
Q |
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| T |
32406907 |
tctgttctgtatttactcctccacatatgttgtcaacttcctgatgttccttccactatcttcggtttatgggaaggggcgtggaactgttgccactggt |
32406808 |
T |
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| Q |
143 |
cgtgttgaacaaggtactatcaaagttggtgaagaggttgagatactaggattgaaacaggtacacataaaatt |
216 |
Q |
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| T |
32406807 |
catgttgaacaaggtactatcaaagttggtgaagaggttgaaatactaggactgacacaggtaaacagaaaatt |
32406734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 37597843 - 37597911
Alignment:
| Q |
116 |
aaggggcgtggaactgttgccactggtcgtgttgaacaaggtactatcaaagttggtgaagaggttgag |
184 |
Q |
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||||| || ||||| ||||| |||||||||||||||||||| | |||||| ||||||| || |||||| |
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| T |
37597843 |
aagggacgaggaacagttgctactggtcgtgttgaacaaggaatcatcaaaattggtgatgaagttgag |
37597911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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