View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_28 (Length: 213)
Name: NF19747_low_28
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 35047784 - 35047604
Alignment:
| Q |
15 |
atgaacattgacaatctgaagttcccctgagaggtaagtaaagtccgatcaaggattctttcagtcaagattcatacttggattctcaagaacaattatc |
114 |
Q |
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| T |
35047784 |
atgaacattgacaatctgaagttcgcctgagaggtaagtaaagtccgatcaaggattctttcagtcaagattcgtacttggattctcaagaacaattatc |
35047685 |
T |
|
| Q |
115 |
ttgtatcgtgtttctgagtgcacaatgtaaagatggcatatggttgtcacggttttaaaaaatgttctgcgactctgattt |
195 |
Q |
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| T |
35047684 |
ttgtatcgtgtttctgagtgcacaatgtaaagatggcatatggttgtcacggttttaaaaaatgttctgtgactctgattt |
35047604 |
T |
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