View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19747_low_5 (Length: 440)

Name: NF19747_low_5
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19747_low_5
NF19747_low_5
[»] chr1 (4 HSPs)
chr1 (83-418)||(17302276-17302609)
chr1 (240-392)||(15504202-15504354)
chr1 (19-87)||(17302649-17302717)
chr1 (240-387)||(2260079-2260226)
[»] chr4 (6 HSPs)
chr4 (240-392)||(11345996-11346148)
chr4 (242-386)||(47491998-47492142)
chr4 (255-386)||(51305258-51305388)
chr4 (243-387)||(34113279-34113423)
chr4 (279-364)||(43901842-43901926)
chr4 (92-120)||(13807592-13807620)
[»] chr7 (2 HSPs)
chr7 (307-394)||(44701546-44701633)
chr7 (300-386)||(19562115-19562202)
[»] chr6 (1 HSPs)
chr6 (244-385)||(6725944-6726085)
[»] chr5 (2 HSPs)
chr5 (240-387)||(11429783-11429933)
chr5 (335-393)||(3003711-3003769)
[»] chr8 (1 HSPs)
chr8 (300-394)||(10517595-10517689)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 83 - 418
Target Start/End: Complemental strand, 17302609 - 17302276
Alignment:
Q  83 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaaactatttctag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17302609 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaa-ctatttctag 17302511  T
Q  183 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagtggtggtttatgtagaatcacgg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  17302510 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagcggtggtttctgtagaatcacag 17302411  T
Q  283 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17302410 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcaagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 17302311  T
Q  383 aacacgtactaaagaaatgtgacattgggactataa 418  Q
    |||||||||| |||||||||||||||||||||||||    
T  17302310 aacacgtact-aagaaatgtgacattgggactataa 17302276  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 15504354 - 15504202
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||||||||    
T  15504354 ttagtgctcgtttggtttagcggtggttactagaaaatcacggtggattttcacgttttcacaaaagcttacttttgtagcttcaggatttccacgtcca 15504255  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 392  Q
    |||| || ||  | |||||||||||| || |||||||||||||||||| ||||    
T  15504254 gcttacctcgaaacgtgatatttgcactgtaaaagctaatccaaacacatact 15504202  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 17302717 - 17302649
Alignment:
Q  19 aattcggggtatatattgattaattttgagtttattaggcatgcactgacagtgtaaactagttataca 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17302717 aattcggggtatatattgattaattttgagtttattaggcatgcactgacagtgtaaactagttataca 17302649  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 387
Target Start/End: Original strand, 2260079 - 2260226
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||||| ||||||||||  |||||||| |  ||||| |||||| ||||| | |||| || ||||| ||| ||||||||||| |  |||| ||||||||    
T  2260079 ttagtgctggtttggtttatcggtggtttctagagaattacggtggatttttatgttttcataaaagtttgtttttgtagcttcaagattttcacgtcca 2260178  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
     ||| || ||| | ||||| ||||| |||||||||||||  |||||||    
T  2260179 acttacctcggaacgtgatctttgcgttgcaaaagctaactcaaacac 2260226  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 11345996 - 11346148
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||| ||||||||||| | |||||||| | || ||||||||| | ||| || ||||  |||||| |||||||||||||||| || |||| |||||| |    
T  11345996 ttagtgttcgtttggtttggcggtggtttttataaaatcacggtaagtttccatgtttctacaaaaccttgcttttgtagcttcaggattttcacgtcta 11346095  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 392  Q
    ||||||| ||| |  |||||||||  |||||||||||||||||||||| ||||    
T  11346096 gcttgcctcggaacatgatatttgtcttgcaaaagctaatccaaacacatact 11346148  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 47492142 - 47491998
Alignment:
Q  242 agtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagc 341  Q
    |||||| ||||||||||  |||||||| |  ||||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || ||||||| |||||||    
T  47492142 agtgcttgtttggtttaacggtggtttttaaagaattacggtggattttcacgttttcacaaaatcttacttttgtaacttcaggatttccatgtccagc 47492043  T
Q  342 ttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 386  Q
    ||||| |  || |||||||||||  |||||||| |||||||||||    
T  47492042 ttgcctctagacgtgatatttgccctgcaaaagttaatccaaaca 47491998  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 386
Target Start/End: Original strand, 51305258 - 51305388
Alignment:
Q  255 tttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatg 354  Q
    ||||| |||||||| |  |||||||||||||||||||| |||| ||||||| |||| |||| ||| || ||||||| ||| |||| |||||| ||||| |    
T  51305258 tttagcggtggttttttaagaatcacggtgaattttcatgttttcacaaaaacttgttttt-tagtttgagaattttcacatccaacttgcctcgggacg 51305356  T
Q  355 tgatatttgcattgcaaaagctaatccaaaca 386  Q
    |||||||| || ||||||||||||||||||||    
T  51305357 tgatattttcactgcaaaagctaatccaaaca 51305388  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 34113423 - 34113279
Alignment:
Q  243 gtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagct 342  Q
    |||||||||||||||||   |||||| |  |||||||||||| |||||||||||| |||||||| || |||||||| ||| |  ||||| || ||||| |    
T  34113423 gtgctcgtttggtttagcaatggtttctagagaatcacggtggattttcacgttttcacaaaagtttacttttgtaccttcaagatttctacatccagtt 34113324  T
Q  343 tgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
    |  | ||||| |||||||| ||| ||||||||||||| |||||||    
T  34113323 tatctcgggacgtgatattcgcaatgcaaaagctaattcaaacac 34113279  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 43901926 - 43901842
Alignment:
Q  279 acggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgc 364  Q
    |||||| |||||||||||| ||||||||||||| |||||||||| || |||||||| |||| |||| |  |||| |||||||||||    
T  43901926 acggtggattttcacgttttcacaaaagcttgc-tttgtagcttcaggatttccacatccaacttgacttgggacgtgatatttgc 43901842  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 13807620 - 13807592
Alignment:
Q  92 cttattggatgtcgatgtaaaactatttt 120  Q
    |||||||||||||||||||||||||||||    
T  13807620 cttattggatgtcgatgtaaaactatttt 13807592  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 44701546 - 44701633
Alignment:
Q  307 cttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 394  Q
    ||||||||||||  ||||| |||||||||||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||||||    
T  44701546 cttgcttttgtacttttaggatttccacgtccagcttaactcgggacgtgatatttacactgcaaaagctaatccaaacacgtactaa 44701633  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 19562115 - 19562202
Alignment:
Q  300 acaaaagcttgctttt-gtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 386  Q
    |||||||||| ||||| |||||||||| |||| || ||| | |||| | |||||  ||||||||||  ||||||||||||||||||||    
T  19562115 acaaaagcttactttttgtagctttaggattttcaggtctaacttgtctcgggacatgatatttgccatgcaaaagctaatccaaaca 19562202  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 6725944 - 6726085
Alignment:
Q  244 tgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagctt 343  Q
    |||| ||||| ||||| |||||||| | |||||||| |||| |||||||||||| ||||||| ||||| ||| || ||  || ||||||| ||||  |||    
T  6725944 tgctggtttgatttagcggtggtttctatagaatcatggtggattttcacgttttcacaaaaacttgcgtttataactccaggatttccaagtcctactt 6726043  T
Q  344 gccccgggatgtgatatttgcattgcaaaagctaatccaaac 385  Q
    ||| |||||||||| |||| |  |||||||||||||||||||    
T  6726044 gcctcgggatgtgagatttacggtgcaaaagctaatccaaac 6726085  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 387
Target Start/End: Complemental strand, 11429933 - 11429783
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgc----ttttgtagctttagaatttccacg 335  Q
    |||||||| ||||||||||||||||| || |  ||||||| | |  |||||||||||| ||||||| |||||    ||||||| ||| || ||| |||||    
T  11429933 ttagtgcttgtttggtttagtggtggattctagagaatcatgatagattttcacgttttcacaaaaacttgcgaacttttgtaacttcaggatt-ccacg 11429835  T
Q  336 tccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
    |||| |||||| ||||| ||||||||| ||  |||||||||| |||||||||    
T  11429834 tccaacttgcctcgggacgtgatatttacaccgcaaaagctattccaaacac 11429783  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 3003711 - 3003769
Alignment:
Q  335 gtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtacta 393  Q
    |||||||||||| ||||| |||| |||| || ||||||||||||||||||||| |||||    
T  3003711 gtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacatacta 3003769  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 10517689 - 10517595
Alignment:
Q  300 acaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 394  Q
    ||||||| || |||||||||||| |  ||||  || || ||||| || | ||||||||||||||| |||| |||| |||||||||||| ||||||    
T  10517689 acaaaagtttacttttgtagcttcaagatttttacatctagcttacctcaggatgtgatatttgccttgcgaaagttaatccaaacacatactaa 10517595  T

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