View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_low_7 (Length: 407)
Name: NF19747_low_7
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 8937835 - 8937460
Alignment:
| Q |
17 |
atataaataactatattggctgcattatccacaatataaaggttcgcattgtaacgggacaagaattatttttgtaccaatgatgtctgaagggactaaa |
116 |
Q |
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| T |
8937835 |
atataaataactatattggctgcattatccacaatataaaggttcgcattgtaacgggacaagaattatttttgtaccaatgatgtctgaagggactaaa |
8937736 |
T |
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| Q |
117 |
ccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttgttat |
216 |
Q |
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| T |
8937735 |
ccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttgttat |
8937636 |
T |
|
| Q |
217 |
tacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaaggat |
316 |
Q |
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| T |
8937635 |
tacctgagtcaactatagagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaaggat |
8937536 |
T |
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| Q |
317 |
tatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtag |
392 |
Q |
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| T |
8937535 |
tatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtag |
8937460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 83 - 392
Target Start/End: Complemental strand, 8945954 - 8945648
Alignment:
| Q |
83 |
tatttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttg |
182 |
Q |
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| T |
8945954 |
tatttttgtaccaatgatgtctgaagggactaaaccattgctaaaccttcctgttggttgatttccactaccaaagtctctaccataaggtagaaagttg |
8945855 |
T |
|
| Q |
183 |
cacttgaacacagtgttgatgatgtagttgttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagat |
282 |
Q |
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||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
8945854 |
cacttgacataagtgccaatg---tagttgttattacctgagtcaactatagagtctccaaacacaatgagtgctggaattgtttcattgtttggtagat |
8945758 |
T |
|
| Q |
283 |
tcacagcattaccataatgtagagagacaaggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcat |
382 |
Q |
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|||||||||||||| |||||||||||| || |||| ||| ||||||||||||| | ||||||||||||||||||||||| |||||||| || || ||||| |
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| T |
8945757 |
tcacagcattaccacaatgtagagagataaagattgtagtaagagagaaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcat |
8945658 |
T |
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| Q |
383 |
gtttttgtag |
392 |
Q |
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|||||||||| |
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| T |
8945657 |
gtttttgtag |
8945648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 31797488 - 31797675
Alignment:
| Q |
86 |
ttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcac |
185 |
Q |
| |
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||||||||||| | |||||| |||||||||||||||||||| || |||||||| | ||| ||| |||| ||| ||||||| |||||||| | || |
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| T |
31797488 |
ttttgtaccaacaaggtctgatgggactaaaccattgctgaacctgccagttgg---aactcctccatcaaaatctctaccatatggtggaaaatcacat |
31797584 |
T |
|
| Q |
186 |
ttgaacacagtgttgatgatgtagttgttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggta |
279 |
Q |
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|||| | |||| |||| ||||||||||| |||| |||||||| ||||||||||| ||| | |||||| ||||||||||||||||||| |
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| T |
31797585 |
ttgataagagtgctgata---tagttgttatttcctggatcaactatagagtcaccaaatacaaaaactgctggcactgtttcattgtttggta |
31797675 |
T |
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