View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_1 (Length: 950)
Name: NF19748_high_1
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_1 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 864; Significance: 0; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 17 - 938
Target Start/End: Complemental strand, 9433 - 8513
Alignment:
| Q |
17 |
agatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagatttgtgaaattgtttggaaattttgatttgctctatatact |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9433 |
agatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagatttgtgaaattgtttggaaattttgatttgctctatatacc |
9334 |
T |
|
| Q |
117 |
aagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgag |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333 |
aagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgag |
9234 |
T |
|
| Q |
217 |
aatagcatgaatttatgcatatacatacaataaaccaaagatgaatcatgactttgttatacataagtacaagactagttcccatgattctagctatgag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9233 |
aatagcatgaatttatgcatatacatacaataaaccaaagatgaatcatgactttgttatacataagtacaaggctagttcccatgattctagctatgag |
9134 |
T |
|
| Q |
317 |
ttcttaagatttttagtgcaagtatggtgcaatgtttaattttgaggggatttaacatgatgaaaacataataatttgtatgtaaatttaagaattaagg |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9133 |
ttcttaagatttttagtgcaagtatggtgcaatgtttaattttgaggggatttatcatgatgaaaacataataatttgtatgtaaatttaagaattaagg |
9034 |
T |
|
| Q |
417 |
ggttcaattgaacaacctgagctctatatgtaactttgccgatgaacctaggggtctcttcttcttttagggttggattggtttgtttcattcttgttat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9033 |
ggttcaattgaacaacctgagctctatatgtaactttgccgatgaacctaggggtctcttcttcttttagggttggattggtttgtttcattcttgttat |
8934 |
T |
|
| Q |
517 |
taggaaggcttatgaactaggttgatctcaannnnnnnnnngttagaatgtaattctctttgaactgttaaaagctttcaatgactcatctttggtttct |
616 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8933 |
taggaaggcttatgaactaggttgatctc-attttttttttgttagaatgtaattctctttgaactgttaaaagctttcaatgactcatctttggtttct |
8835 |
T |
|
| Q |
617 |
ttgcatccaagaaataggtggatgaatcatgttaatatcattagtggtttcaatttggagtctcacttatatgctaaggtaacacgtgtgcggaaaaatt |
716 |
Q |
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| T |
8834 |
ttgcatccaagaaataggtggatgaatcatgttaatatcattagtggtttcaatttggagtctcacttatacgctaaggtaacacgtgtgcggaaaaatt |
8735 |
T |
|
| Q |
717 |
agctaattttgattttcaaataattgatttagtttggtaggttttgttaccaatgtgcatcaaagaaggatactctagaaatagatcgagtctatttaat |
816 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8734 |
agctaattttgattttcaaataattgatttagtttggtaggttttgttaccaatgtgcatcaaagaaggatactctagaaatagaccgagtctatttaat |
8635 |
T |
|
| Q |
817 |
tattgattgaaatgatgattttgagtttggtcttgttgctagttgtgttgtataaaaccacactttgttttccttcaccatgttttcttgataaggtttt |
916 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8634 |
tattgattgaaatgatgattttgagtttggtcttgttgctagttgtgttgtataaaaccacactttgttttccttcaccatgttttcttgataaggtttt |
8535 |
T |
|
| Q |
917 |
ggtttagtaccctctagatatt |
938 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8534 |
ggtttagtaccctctagatatt |
8513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 21541679 - 21541990
Alignment:
| Q |
17 |
agatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagatttgtgaaattgtttggaaattttgatttgctctatatact |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21541679 |
agatgtgaggttgtttatgtgaagaatctcattggtgtttttgttgaagaggtttgagatttgtgaaatggtttggaaattttgatttgctctatatact |
21541778 |
T |
|
| Q |
117 |
aagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgag |
216 |
Q |
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| T |
21541779 |
aagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgaacctggtgatgtttcatttgaataacaattagaactgtcgtaaggttgttgag |
21541878 |
T |
|
| Q |
217 |
aatagcatgaatttatgcatatacatacaataaaccaaagatgaatcatgact---ttgttatacataagtacaagactagttcccatgattctagctat |
313 |
Q |
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| T |
21541879 |
aatagcatgaatttatgcatatacatatgataaaccaaagatgaatcatgactttgttgttatacataagtacaagattagttcccatgattctagctat |
21541978 |
T |
|
| Q |
314 |
gagttcttaaga |
325 |
Q |
| |
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|||||||||||| |
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| T |
21541979 |
gagttcttaaga |
21541990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 332 - 443
Target Start/End: Complemental strand, 19926263 - 19926151
Alignment:
| Q |
332 |
gtgcaagtatggtgcaatgtttaattttgaggggatttaacatgatgaaaacataataatttgtatgtaaatttaagaattaagg-ggttcaattgaaca |
430 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||| ||| |||||| |||||| |
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| T |
19926263 |
gtgcaagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaacc |
19926164 |
T |
|
| Q |
431 |
acctgagctctat |
443 |
Q |
| |
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|||||||||||| |
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| T |
19926163 |
ccctgagctctat |
19926151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 8784115 - 8784032
Alignment:
| Q |
329 |
ttagtgcaagtatggtgcaatgtttaattttgaggggatttaacatgatgaaaacataataatttgtatgtaaatttaagaatt |
412 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||| |||||| || |||| ||| ||||| |
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|
| T |
8784115 |
ttagtgcaagtgtggtgcaatgtttacatttgaggggattcaacatgagaaaaacataacaatttgaatataaaattatgaatt |
8784032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 46615654 - 46615609
Alignment:
| Q |
332 |
gtgcaagtatggtgcaatgtttaattttgaggggatttaacatgat |
377 |
Q |
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| T |
46615654 |
gtgcaagtgtggtgcaatgtttatatttgaggggattcaacatgat |
46615609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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