View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_20 (Length: 453)
Name: NF19748_high_20
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 29181798 - 29182218
Alignment:
| Q |
18 |
ataactgccataaccactaacagaacaactacattaaatgcaaaaataatctaattaggccttggtagacggtgactgtgtcttgtttctactttcataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181798 |
ataactgccataaccactaacagaacaactacattaaatgcaaaaataatctaattaggccttggtagacggtgactgtgtcttgtttctactttcataa |
29181897 |
T |
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| Q |
118 |
gtgatctatcaactttcgcttactctggattatcaacaagtatagtcaataatctaattaacctagatggctcagctccagcattaaccatcattgacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181898 |
gtgatctatcaactttcgcttactctggattatcaacaagtatagtcaataatctaattaacctagatggctcagctccagcattaaccatcattgacta |
29181997 |
T |
|
| Q |
218 |
tacttcccaaaatcctttattttaaacatagtaacattcaattacagacattaccaacaatcaacatgcattagctaaaattatatattttgttgcggtc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29181998 |
tacttcccaaaatcctttattttaaacatagtaacattcaattacagacattaccaacaatcaacatgcattagctaaacttatatattttgttgcggtc |
29182097 |
T |
|
| Q |
318 |
aatctttgaagttacaagaaaaggaccttatcgaccacagtggtgtacctaccaattctaataataaatatgaagacattacatccataaataatgctaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29182098 |
aatctttgaagttacaagaaaaggaccttatcgaccacagtggtgtacctaccaattctaataataaatatgaagacattacatccataaataatgctaa |
29182197 |
T |
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| Q |
418 |
ttgcaaacatagaaacacagg |
438 |
Q |
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||||||||||||||||||||| |
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| T |
29182198 |
ttgcaaacatagaaacacagg |
29182218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 12668304 - 12668228
Alignment:
| Q |
362 |
gtacctaccaattctaataataaatatgaagacattacatccataaataatgctaattgcaaacatagaaacacagg |
438 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12668304 |
gtacctgccaattctaataataaatatgaagacattacatccataaataatgctaattgcaaacatagaaacacagg |
12668228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 12668383 - 12668312
Alignment:
| Q |
21 |
actgccataaccactaacagaacaactacattaaatgcaaaaataatctaattaggccttggtagacggtga |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12668383 |
actgccataaccactaacagaacaactacattaaatgcaaaaataatctaattaggccttggtagaccgtga |
12668312 |
T |
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