View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_22 (Length: 444)
Name: NF19748_high_22
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 55340012 - 55339586
Alignment:
| Q |
3 |
aggaggagcacagacaacaa-gaaaagaaactaacaaacactaagggccaaagtaatatcaaatttcttaaggcctaagaaacaaactaac--------- |
92 |
Q |
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| T |
55340012 |
aggaggatcatacacaacaatgaaaagaaactaacaaacaccaagggccaaagtaatatcaaatttcttaaggcctaagaaacaaactaacaaacaactg |
55339913 |
T |
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| Q |
93 |
-------------aataaaaacagatattcagcaaaccaacaatgtcatatccatttttggttttcctcatacaacaacttgtcgtagtgttacgaagtg |
179 |
Q |
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| T |
55339912 |
ggggaactccaacaacaaaaacagatattcagcaaaccaacaatgtcatatccatttttggttttcctcgtacaacaactagtcgtagtgttacgaagtg |
55339813 |
T |
|
| Q |
180 |
ttgattgatgctgctgcttttttctttgttctgacttctgaaatgacttataaaaattgtctaggccattaaaaatgttcccagttatgttaaaggtgat |
279 |
Q |
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| T |
55339812 |
ttgattgatgctgctgcttttttctttgttctgacttctgaaatgactcctaaaaattgtctaggccattaaaaatgttcacagttatgttaaaggtgat |
55339713 |
T |
|
| Q |
280 |
gcgacattgataccatttcatgcggaaccttcaaaataagttttatacatcataaactgaataggctacatcaaacaactactgataatactaataatca |
379 |
Q |
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||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55339712 |
gcgacattgataccatttcatacggaaccttcaacacaagttttataaatcataaactgaataggctacatcaaacaactactgataatactaataatca |
55339613 |
T |
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| Q |
380 |
gaaaaaagatgatgggaatgtgggggg |
406 |
Q |
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| T |
55339612 |
gaaaaaagatgatgggactgtgggggg |
55339586 |
T |
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