View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_23 (Length: 439)
Name: NF19748_high_23
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 21181324 - 21180907
Alignment:
| Q |
13 |
aatatcatatgatcaaacaatgtcatattttggaatgag--ggattacggaaaaatactttattgaacaca-----gttaagtacgaaagatagaatcat |
105 |
Q |
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| T |
21181324 |
aatatcatatgatcaaacaatgtcatattttggaatgagagggattacggaacaatactttattgaacacaccttagttaagtacgaaagatagaatcat |
21181225 |
T |
|
| Q |
106 |
ggaacaagactttaccgaataatctaatattacaagatcacattactcaatcaattgatatttgcaaattctttgaacccttttgagctttgattaaaag |
205 |
Q |
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| T |
21181224 |
ggaacaagactttatcgaataatctaatattacaagatcacattactcaatcaattgatatttgcaaattctttgaacccttttgagctttgactaaaag |
21181125 |
T |
|
| Q |
206 |
ttgtgcagatccacgtcgaaaatcttctttaccatcatcttcattccacaacttaatattaatctgttccaaaacttttccttgcataagaaagcaacaa |
305 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181124 |
ttgtgcagatccacgtcgaaattcttctttaccatcatcttcattccacaacttaatattaatctgttccaaaacttttccttgcataagaaagcaacaa |
21181025 |
T |
|
| Q |
306 |
gtcataagttcttcgtttgtgcctctcaatccaattacttctaccaccttcaaactatatttcaagcattcaggaaacactcgacgagtttgccaaaatt |
405 |
Q |
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| T |
21181024 |
gtcataagttcttcgtttgtggctctcaatccaattacttctaccaccttcaaactatttttcaagcattcaggaaacactcgacgagtttgccaaaatt |
21180925 |
T |
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| Q |
406 |
tcttaaggtctacttgat |
423 |
Q |
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| T |
21180924 |
tcttaaggtctacttgat |
21180907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 152 - 404
Target Start/End: Original strand, 40993738 - 40993987
Alignment:
| Q |
152 |
tcaatcaattgatatttgcaaattctttgaacccttttgagctttgattaaaagttgtgcagatccacgtcgaaaatcttctttaccatcatcttcattc |
251 |
Q |
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| T |
40993738 |
tcaatcaattgatattcgcaaattctttgaacgctttggagcattgactaaaagttgtgcacgtccatggcgatattccacctttccatc---ttcattc |
40993834 |
T |
|
| Q |
252 |
cacaacttaatattaatctgttccaaaacttttccttgcataagaaagcaacaagtcataagttcttcgtttgtgcctctcaatccaattacttctacca |
351 |
Q |
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| T |
40993835 |
cacaacttaatattaatctgttccaaaacttttccttgcataagaaagcaacaagtcataagttcttcgtttgtggctctcaatccaattacttctacca |
40993934 |
T |
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| Q |
352 |
ccttcaaactatatttcaagcattcaggaaacactcgacgagtttgccaaaat |
404 |
Q |
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| T |
40993935 |
ccttcaaagtattttgcaagcattgaggaaacactcgacgcgtttgccaaaat |
40993987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 244 - 415
Target Start/End: Original strand, 40989433 - 40989610
Alignment:
| Q |
244 |
cttcattccacaacttaatat------taatctgttccaaaacttttccttgcataagaaagcaacaagtcataagttcttcgtttgtgcctctcaatcc |
337 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||| |
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| T |
40989433 |
cttcattccacaacttaatataattaataatatgttccaaaaaaattccttgcataagaaagcaacaagttataagttattcgtctgtggctctcaatcc |
40989532 |
T |
|
| Q |
338 |
aattacttctaccaccttcaaactatatttcaagcattcaggaaacactcgacgagtttgccaaaatttcttaaggtc |
415 |
Q |
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| T |
40989533 |
tattacttctaccaccttcaaagtattttgcaagcattgagaaaacactcgacgagtttgccaaaatttcttaaggtc |
40989610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 241 - 416
Target Start/End: Original strand, 40986064 - 40986239
Alignment:
| Q |
241 |
catcttcattccacaacttaatattaatctgttccaaaacttttccttgcataagaaagcaacaagtcataagttcttcgtttgtgcctctcaatccaat |
340 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||| ||||||||| ||||||| ||||| |||||| |
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| T |
40986064 |
catcttcattcgacaacttaatattaatctgttccaaagctttccctttcattagaaagcaacaagtcctaagttcttggtttgtggctctcgatccaaa |
40986163 |
T |
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| Q |
341 |
tacttctaccaccttcaaactatatttcaagcattcaggaaacactcgacgagtttgccaaaatttcttaaggtct |
416 |
Q |
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| T |
40986164 |
tatttctatcatcttcaaagtattttgcaagcattgagcaaacactcgacgcgtttgccaaaatttctcaaggtct |
40986239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 40993603 - 40993665
Alignment:
| Q |
81 |
agttaagtacgaaagatagaatcatggaacaagactttaccgaataatctaatattacaagat |
143 |
Q |
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| T |
40993603 |
agttaagtacgaaagatagaatcatggaacaagactttattgaataatctaatattaaaagat |
40993665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 40985902 - 40985946
Alignment:
| Q |
111 |
aagactttaccgaataatctaatattacaagatcacattactcaa |
155 |
Q |
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| T |
40985902 |
aagactttattgaataatctagtattacaagatcacattactcaa |
40985946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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