View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_24 (Length: 435)
Name: NF19748_high_24
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 50102717 - 50102314
Alignment:
| Q |
18 |
agtttcttagagagagcggtcacccatttatcagaaccgtgcagtgctttaccaacaggtggtattccctggtaggagtaaaaattaaacttaaatctac |
117 |
Q |
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| T |
50102717 |
agtttcttagagagagcggtcacccatttatcagaatcgtgcagtgctttaccaacaggtggtattccctggtaggagtaaaaattaaacttaaatctac |
50102618 |
T |
|
| Q |
118 |
aaagaaactaaggatggaccggtatctaataatggataggaagccatcaacagaaaaatagaaagtatatgaacgagaatgaagtttgacaaagttatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50102617 |
aaagaaactaaggatggaccggtatctaataatggataggaagccatcaacagaaaaatagaaagtatatgaacgagaatgaagtttgacaaagttatcc |
50102518 |
T |
|
| Q |
218 |
aatttaaataattaatatatattcaatctccaagctaaattgcattttccttgcatgttttgggctttcttaataattttacatacaaatgacaacaagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50102517 |
aatttaaataattaatatatattcaatctccaagctaaattgcattttccttgcatgttttgggctttcttaataattttacatacaaatgacaacaagc |
50102418 |
T |
|
| Q |
318 |
cttccacgataatgagataatatgcactatggggaattcagtgttaagaatcaaataatgcagttcatgacaaattttacttataacaaaccaactgatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50102417 |
cttccacgataatgagataatatgcactatggggaattcagtgttaagaatcaaataatgcagttcatgacaaattttacttataacaaaccaactgatc |
50102318 |
T |
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| Q |
418 |
tgtg |
421 |
Q |
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|||| |
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| T |
50102317 |
tgtg |
50102314 |
T |
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