View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_high_25 (Length: 417)
Name: NF19748_high_25
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 21592879 - 21592494
Alignment:
| Q |
16 |
atgaaggttcaaggagaaagcctaacagatatgacttgcacaatcgccgatgggaatgggaagatgctcctcaaagggaagaaactccatggcatactcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21592879 |
atgaaggttcaaggagaaagcctaacagatatgacttgcacaatcgccgatgggaatgggaagatgctcctcaaagggaagaaactccatggcatactcc |
21592780 |
T |
|
| Q |
116 |
ttgttcgtcctttaattcactttctcctttggatcatgtttctccgtctccttttccaatacgggcttctggctcttcacgcaaatcttctgttgctgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21592779 |
ttgttcgtcctttaattcactttctcctttggatcatgtttctccgtctccttttccaatacgggcttctggctcttcacacaaatcttctgttgctgga |
21592680 |
T |
|
| Q |
216 |
tataatcgaagattgcataaactcgctttttcttcagatgaggaggaaatagcaaataaatctgacttgggtgaagaacataagtatgagattactgaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21592679 |
tataatcgaagattgcataaactcgctttttcttcagatgaggaggaaatagcaaataaatctgacttgggtgaagaacataagtatgagattactgaaa |
21592580 |
T |
|
| Q |
316 |
gcatgcgtcaagagatggaatacagtgcagatcaagcatggtatgatagagaggaaggaagtacattgtttgattttgataactct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21592579 |
gcatgcgtcaagagatggaatacagtgcagaccgagcatggtatgatagagaggaaggaagtacattgtttgattttgataactct |
21592494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 360
Target Start/End: Original strand, 42095371 - 42095475
Alignment:
| Q |
256 |
aggaggaaatagcaaataaatctgacttgggtgaagaacataagtatgagattactgaaagcatgcgtcaagagatggaatacagtgcagatcaagcatg |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
42095371 |
aggaggaaatagcagataaatctgacttgggtgaagaacacaagtatgagattactgaaagcatgcgtcaagagatggaatatgatgcagaccgagcatg |
42095470 |
T |
|
| Q |
356 |
gtatg |
360 |
Q |
| |
|
||||| |
|
|
| T |
42095471 |
gtatg |
42095475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 42095134 - 42095259
Alignment:
| Q |
128 |
taattcactttctcctttggatcatgtttctccgtctccttttccaatacgggcttctggctcttcacgcaaatcttctgttgctggatataatcgaaga |
227 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
42095134 |
taattcaccttctccttgggaccatgtttctccgtctcctgttccaatacgagcttccggctcttcagtcaaatcttctgtttctggatataatcgaagg |
42095233 |
T |
|
| Q |
228 |
ttgcataaactcgctttttcttcaga |
253 |
Q |
| |
|
| ||||||||| || ||||||||||| |
|
|
| T |
42095234 |
tcgcataaacttgccttttcttcaga |
42095259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University