View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_3 (Length: 862)
Name: NF19748_high_3
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 567
Target Start/End: Complemental strand, 16282491 - 16281925
Alignment:
| Q |
12 |
tgagatgaacagtgagtagaaaagttatacttcggacgcaaatgtatagttggttagcaattgacaatattgctctctcaaatgtttgtttgtaaccggg |
111 |
Q |
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| T |
16282491 |
tgagacgaacggtgagtagaacggtcgtacttcggacgcaaacgtatagttggttagcaattgacaatattgctctctcaaatgtttgt----aaccagg |
16282396 |
T |
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| Q |
112 |
aggttaggccgcttaagtgatttaagttaagaattaaaagagttgatgtgatcaacgtttagggtttaagaattgaggagccaaaatttggtctcgggca |
211 |
Q |
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| T |
16282395 |
aggttaggcagcttaagtgatttaagttaagaattaaaagagttgatgcgatcaacgtttagggtttaagaattgaggagccaaaatttggtctcgggca |
16282296 |
T |
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| Q |
212 |
tttcacaattagtttataattgtttcaatgtattatgacctctgcatcatatttcaaaaagtgttatgga-----------------ttgttttttaaag |
294 |
Q |
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| T |
16282295 |
tttcacaattagtttataattgtttcaatgtattatgacctctacatcatatttcgaaaagtgttatggattatttctgtttagtatttgttttttaaag |
16282196 |
T |
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| Q |
295 |
tttcttgattacatgcgtactcctatttgttttttcttgattacatgattttgttttaaggaaagaaagtttctttgatggatttacgcttttattgttt |
394 |
Q |
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| T |
16282195 |
tttcttgattacatgcgtactcctatttgttttttcttgattacat-atttttttttaaggaaagaaagtttctttgatggatttacgcttttattgttt |
16282097 |
T |
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| Q |
395 |
taaacgaacaagcacaaaaagttttcataataatgtatggattaacgatgaagaaaataacgtggaatctccctcttatatgttgtagtggctcttgata |
494 |
Q |
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| T |
16282096 |
taaacga--aagcacaaaaagttttcaaaataatgtatggattaacgatgaagaaaatagcgtggaatctccctcttatatgttgtcgtggctcttgata |
16281999 |
T |
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| Q |
495 |
aaatgccactatttgtttaa-nnnnnnnngaatcggaccactatttgtttaatgaaatatcagtctactgcaac |
567 |
Q |
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| T |
16281998 |
aaatgccattatttgtttaatttttttttgaatcgggccactatttgtttaatgaaatatcagtctactgcaac |
16281925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 633 - 796
Target Start/End: Complemental strand, 16281865 - 16281686
Alignment:
| Q |
633 |
caaagatgtttagcagcaaaaatatct---gagtgcgagatatcaattaattatgctcgttttcaaatgaaag-ttttctgtattcccttatacttttga |
728 |
Q |
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| T |
16281865 |
caaagatgtttagcagcaaaaatatctttggagtgcgagatatcaattaattatgctccttttcaaattaaagttttttttttttcccttacacttttga |
16281766 |
T |
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| Q |
729 |
gacacaagagtcggtcggtct------------tagagcatctaaattggatcaaaaacaaccacataactaacataagt |
796 |
Q |
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| T |
16281765 |
gacacaagagtcggtcagtctctttatcgttcagagagcacctaaattagatcaaaaacaactacataactaacataagt |
16281686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 784 - 837
Target Start/End: Complemental strand, 16281665 - 16281612
Alignment:
| Q |
784 |
aactaacataagtaatagggacatcacatcttaacttaaaatcctaatatatta |
837 |
Q |
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| T |
16281665 |
aactaacataagtaatagggacatcacatcttaacttaaaatcctaatatatta |
16281612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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