View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_30 (Length: 374)
Name: NF19748_high_30
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 39355333 - 39354979
Alignment:
| Q |
1 |
ttcatgtgcttcgtgattatatgcgagcatcttgaggtatggataagacttgtgcctcaagatttgataactaatttattttcctattttgagtgtaggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39355333 |
ttcatgtgcttcgtgattatatgcgagcatctggaggtatggattagacttgtgcctcaagatttgataactaatttattttcctattttaagtgtaggt |
39355234 |
T |
|
| Q |
101 |
aatttgttttcaaaaacattagtaaa-gatagaatggagattttgattctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaag |
199 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39355233 |
aatttgttttcaaaaacattagtaaaagatagaacggagattttgattcttggtggccgacaacattcatgacttcatgctggcatctgaggacttgaag |
39355134 |
T |
|
| Q |
200 |
aaaccaaagctaattttgaagaatgattccaaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaagtcaaagcaatcct |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39355133 |
aaaccaaagctaattttgaagaatgattccaaagatcggatattccaacttatgtaatacaaaattccat--gggccattgaagaagtcaaagcaatcct |
39355036 |
T |
|
| Q |
300 |
tagcataaggaaattgtgtgtattggcttnnnnnnngctatgaatggttggattaaa |
356 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39355035 |
tagcataaggaaattgtgtgtattggctgaaaaagagctatgaatggttggattaaa |
39354979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 32992728 - 32992980
Alignment:
| Q |
35 |
aggtatggataagacttgtgcctcaagatttgataactaatttattttcctattttgagtgtaggtaatttgttttcaaaaacattagtaaa-gatagaa |
133 |
Q |
| |
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|||||||||| |||||||||||| |||| |||||||||||| ||||||| | ||| || ||| | | |||||||||||| |||| ||| ||| ||| |
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| T |
32992728 |
aggtatggattagacttgtgccttctgattggataactaatttcttttcctttgatgattgcagggattgggttttcaaaaaccttagcaaaagatcgaa |
32992827 |
T |
|
| Q |
134 |
tggagattttgattctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaagaaaccaaagctaattttgaagaatgattccaaag |
233 |
Q |
| |
|
||||| || | | | || ||||| | |||| ||||||||| |||| |||||| || ||||||| |||||| ||||||| |||||||||| |||| ||||| |
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| T |
32992828 |
tggagtttctaagtttaagtggcagccaactttcatgactacatgttggcatatgtggacttggagaaac-aaagctatttttgaagaaggatttcaaag |
32992926 |
T |
|
| Q |
234 |
accggatattccaacttatgtaatacaaaattccatcagggccattgaagaagt |
287 |
Q |
| |
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||| |||| ||||||||||| || ||||||| ||| | ||||||||||||||| |
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| T |
32992927 |
accagataacccaacttatgtcatccaaaatttcattatggccattgaagaagt |
32992980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 46911063 - 46911315
Alignment:
| Q |
35 |
aggtatggataagacttgtgcctcaagatttgataactaatttattttcctattttgagtgtaggtaatttgttttcaaaaacattagtaaa-gatagaa |
133 |
Q |
| |
|
|||||||||| |||||| ||||| | |||| ||||| |||||| ||||||| | ||| || ||| | | |||||||||||| |||| ||| ||| || |
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|
| T |
46911063 |
aggtatggattagacttttgccttatgattggataaataatttcttttcctttgatgattgcagggattgggttttcaaaaaccttagcaaaagatcgat |
46911162 |
T |
|
| Q |
134 |
tggagattttgattctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaagaaaccaaagctaattttgaagaatgattccaaag |
233 |
Q |
| |
|
||||| || ||| | |||||||| |||||| ||||||||| |||||||| |||| | ||||| |||||| ||||||| |||||||||| |||||||||| |
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| T |
46911163 |
tggagtttctgagtttaggtggcagacaactttcatgactacatgctgggatctatgtacttggagaaac-aaagctatttttgaagaaggattccaaag |
46911261 |
T |
|
| Q |
234 |
accggatattccaacttatgtaatacaaaattccatcagggccattgaagaagt |
287 |
Q |
| |
|
| | |||| |||||||||||| || ||||||| ||| |||| | |||||||||| |
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|
| T |
46911262 |
atcagataatccaacttatgtcatccaaaatttcattagggtcgttgaagaagt |
46911315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 40537055 - 40536814
Alignment:
| Q |
47 |
gacttgtgcctcaagatttgataactaatttattttcctattttgagtgtaggtaatttgttttcaaaaacattagtaaa-gatagaatggagattttga |
145 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||| | |||| || | | | | |||||||||||| |||| ||| ||| || ||||| || ||| |
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|
| T |
40537055 |
gacttgtgccttctgattggataactaatttcttttcctttgttgattgcaaggattgggttttcaaaaaccttagcaaaagatcgattggagtttctga |
40536956 |
T |
|
| Q |
146 |
ttctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaagaaaccaaagctaattttgaagaatgattccaaagaccggatattcc |
245 |
Q |
| |
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| ||||||| || ||| ||||||||| |||||||||||||| ||||||| |||||| ||| |||||||| | |||| |||||||| |||| || |
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| T |
40536955 |
gtttaggtggaagaaaactttcatgactacatgctggcatctgtggacttggagaaacaaaactgttttttgaagtaggatttcaaagaccagataaccc |
40536856 |
T |
|
| Q |
246 |
aacttatgtaatacaaaattccatcagggccattgaagaagt |
287 |
Q |
| |
|
||||||||| || ||||||| ||| ||||||||||||||||| |
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|
| T |
40536855 |
aacttatgtcatccaaaatttcattagggccattgaagaagt |
40536814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 287
Target Start/End: Complemental strand, 45753375 - 45753119
Alignment:
| Q |
35 |
aggtatggataagacttgtgcctcaagatttgataactaatttattttcctattttgagtgtagg----taatttgttttcaaaaacattagtaaa-gat |
129 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||| ||||||| | |||| || ||| || | |||||||||||| |||| ||| ||| |
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| T |
45753375 |
aggtatggattagacttgtgccttctgattggataactaatttcttttcctttgttgattgcagggatatattgggttttcaaaaaccttagcaaaagat |
45753276 |
T |
|
| Q |
130 |
agaatggagattttgattctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaagaaaccaaagctaattttgaagaatgattcc |
229 |
Q |
| |
|
| ||||| || | | | |||||||| ||||| ||||||| | ||||||| ||||| ||||||| |||||| ||| ||| |||||||||| |||| | |
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| T |
45753275 |
caattggagtttctaagtttaggtggcagacaattttcatgattacatgctgacatctttggacttggagaaacaaaa-ctatttttgaagaaggatttc |
45753177 |
T |
|
| Q |
230 |
aaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaagt |
287 |
Q |
| |
|
||| ||| ||| ||||||||||| || ||||||| ||| ||||||||||||||||| |
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|
| T |
45753176 |
aaataccaaataacccaacttatgtcatccaaaatttcattagggccattgaagaagt |
45753119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 42161788 - 42161543
Alignment:
| Q |
1 |
ttcatgtgcttcgtgattatatgcgagcatcttgaggtatggataagacttgtgcctcaagatttgataactaatttattttcctattttgagtgtaggt |
100 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||||| ||||||||| ||| |||||| ||||||||||| || |||| | || | || ||| |
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|
| T |
42161788 |
ttcatgtgcttcgtgattgcaggcatgcatctc-aggtatggactagacttgtgtctccagattttataactaatttcttgtcctttgttaattgcaggg |
42161690 |
T |
|
| Q |
101 |
aatttgttttcaaaaacattagtaaa-gatagaatggagattttgattctaggtggccgacaacattcatgacttcatgctggcatctgaggacttgaag |
199 |
Q |
| |
|
||| |||||| |||| | | | ||| ||| |||||||| | | | |||||||||| |||||| ||||||||| | || |||||| || ||| || || |
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|
| T |
42161689 |
aatgtgtttttaaaagcctcggcaaaagatggaatggagttatcaactctaggtggcagacaacgttcatgactacctgttggcatttgtcgacatggag |
42161590 |
T |
|
| Q |
200 |
aaaccaaagctaattttgaagaatgattccaaagaccggatattccaa |
247 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
42161589 |
aaac-aaagctatttttgaagaaggattccaaagaccggataatccaa |
42161543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 27890234 - 27890162
Alignment:
| Q |
213 |
ttttgaagaatgattccaaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaa |
285 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||| ||||| || |||||| ||||||| |||||||||| |
|
|
| T |
27890234 |
ttttgaagaaagattccaaagaccgactaatccaacctatgttatctaaaattacatcaggttcattgaagaa |
27890162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 26208200 - 26208272
Alignment:
| Q |
213 |
ttttgaagaatgattccaaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaa |
285 |
Q |
| |
|
|||||||||| || |||||||||||| || |||| ||||||| || ||||||| ||||||| |||||||||| |
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|
| T |
26208200 |
ttttgaagaaggaatccaaagaccggctaatccaccttatgttatccaaaattacatcaggttcattgaagaa |
26208272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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