View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_32 (Length: 369)
Name: NF19748_high_32
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 39987470 - 39987115
Alignment:
| Q |
1 |
tttttccgacgcggttgttaaggttttgtaggttctatctcccgcgtcgttcatgcgactaaacaaagcttgaagaaaataagatgaaagtttttgatct |
100 |
Q |
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| T |
39987470 |
tttttccgacgcggttgttaaggttttgtaggttctatctcccgcgtcgttcatgcgactaaacaaagcttgaagaaaataagatgaaagtttttgatct |
39987371 |
T |
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| Q |
101 |
gtgtcaccatatggggtactaagctcgtttagcatccacatgagttgttggattcggtttgtgtgattgtcggaaaatgcacgtgcagtttcaaggagga |
200 |
Q |
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| T |
39987370 |
gtgtcaccatatggggtactaagctcgtttagcatccacatgagttgttggattcggtttgtgttattgtcggaaaatgcacgtgcagtttcaaggagga |
39987271 |
T |
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| Q |
201 |
tgttttgtgaccaagagttagcggaaagttcaaagttgaagtaatcatgggagggtgagaaagagtaattatcagttgtggtgggggtgttgatagtatt |
300 |
Q |
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| T |
39987270 |
tgttttgtgaccaagagtgaccggagaattcaaagttgaagtaatcatgggagggtgagaaagagtaattatcagttgtggtgggggtgttgatagtatt |
39987171 |
T |
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| Q |
301 |
ataagtagtgtttggagtagtgatattagtagtggaagcataaggataagtataat |
356 |
Q |
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| T |
39987170 |
ataagtagtgtttggagtagtgatagtagtagtggaagcataaggataagtataat |
39987115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 5365952 - 5366013
Alignment:
| Q |
89 |
agtttttgatctgtgtcaccatatggggtactaagctcgtttagcatccacatgagttgttg |
150 |
Q |
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| T |
5365952 |
agtttttgttctatgtcaccataaggggagcttagttcgttaagcatccacatgagttgttg |
5366013 |
T |
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