View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_35 (Length: 338)

Name: NF19748_high_35
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_35
NF19748_high_35
[»] chr3 (17 HSPs)
chr3 (17-327)||(19839624-19839934)
chr3 (17-327)||(20035180-20035490)
chr3 (17-306)||(19957297-19957586)
chr3 (17-306)||(19819728-19820017)
chr3 (17-261)||(19833067-19833311)
chr3 (17-290)||(19850240-19850513)
chr3 (30-226)||(20005917-20006112)
chr3 (17-81)||(19813664-19813728)
chr3 (136-176)||(14855592-14855632)
chr3 (136-176)||(20019605-20019645)
chr3 (136-176)||(19968651-19968691)
chr3 (17-81)||(19968737-19968801)
chr3 (149-216)||(19813562-19813629)
chr3 (199-241)||(19963929-19963971)
chr3 (199-241)||(20026453-20026495)
chr3 (17-81)||(19964080-19964144)
chr3 (17-81)||(20026280-20026344)
[»] chr5 (1 HSPs)
chr5 (17-268)||(27473015-27473266)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 19839934 - 19839624
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19839934 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 19839835  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19839834 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 19839735  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgtcactagcaat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19839734 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaactatcaccttgagtctcaagtaaacagactttgtcactagcaat 19839635  T
Q  317 ccttgattctt 327  Q
    |||||||||||    
T  19839634 ccttgattctt 19839624  T

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Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 20035180 - 20035490
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    |||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  20035180 aaatcttgcttctttaagcttagaaaccactctttcaagcttttccattctgttttcaagatcaaattccatgtctagtgtaaaaggctcaacattttcc 20035279  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||| |||||||||||||||| |||||||||||    
T  20035280 ccattgatgtcattgacatcatttctatcataaaatggactctttatttcatcttcatcaccacatccagctatttcaccatccacatatgatgatataa 20035379  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgtcactagcaat 316  Q
    ||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||| | |||||||||||||||  |||||| ||||||||||||| |||    
T  20035380 aatcaccaaattcagaattagacaaagagacttcatttctcacagcatagctacaaatttcaccttgagtctcagataaacaaactttgtcactagaaat 20035479  T
Q  317 ccttgattctt 327  Q
    ||||| |||||    
T  20035480 ccttgcttctt 20035490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 19957586 - 19957297
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||| |||||| |||||    
T  19957586 aaatcttgcttctttaagcttagaaaccactctttcaagcttctcaatcctgttttcaagatcaaataccatgtctagtgtaaaaggatcaacactttcc 19957487  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||||||| |    
T  19957486 ccattgatgtcgttgacatcatttctatcataaaatggactcttgatttcatcttcatcacaaaatccagctatttcaccatccatatttgatgatatga 19957387  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgt 306  Q
    | ||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||  | |||||||||||||||  ||||||||||||||    
T  19957386 attcaccaaattcagaactagacaaagagacttcatttctgatagcatcgctacagctttcaccttgagtctcagctaaacagactttgt 19957297  T

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Target: chr3; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 19820017 - 19819728
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||| |||||||| ||||     
T  19820017 aaatcttgcttctttgagcttagaaaccactctttcaagcttctcgatcctgttttcaagatcaagtaccatctctagtgtaaaacgctcaacattttcg 19819918  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||| |||||||||||||    
T  19819917 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcaccacatccaactatttcaccatccacttttgatgatataa 19819818  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctcaagtaaacagactttgt 306  Q
    ||||||||||||||||| ||||||| |||||||  |||||||||||||||| |||| | ||| |  |||| |||  ||||||||||||||    
T  19819817 aatcaccaaattcagaactagacaaagagacttgatttctgatagcatagcgacaactttcaacccgagtgtcagataaacagactttgt 19819728  T

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Target: chr3; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 19833311 - 19833067
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||| || |||||||||||||||| |  ||||| ||||||||||||||||||| |||||    
T  19833311 aaatctttcttctttaagcttagaaaacactctttcaagcttctcaattctgttttcaagatcaaatatcatgtctagtgtaaaaggctcaacactttcc 19833212  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    |||||||||| |||||||||| |||||| ||||| | |||||||| ||||||||||||| |  ||| | || ||||||||||||||||||||||||||||    
T  19833211 ccattgatgtaattgacatcaattctattataaagtggactcttgctttcatcttcatccccacattcggctatttcaccatccacatttgatgatataa 19833112  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatag 261  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||    
T  19833111 aatcaccaaattcagaattagacaaagatacttcgtttctaatag 19833067  T

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Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 19850513 - 19850240
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    |||||||||||||||||| ||||| | |||| | |||| |||||| ||||||||||||||||||| ||| |||| || | ||||||| ||||||  ||||    
T  19850513 aaatcttgcttctttaagcttagacaacactttatcaaacttctcaatcctgttttcaagatcaaattctatgtatactctaaaaggatcaacaccttcc 19850414  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    ||| ||||||||| ||||||||||| |||| ||||| || ||||||||||||||||||| |  |||||||| |||| || ||||||||||||||||||||    
T  19850413 ccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttgacgatccacatttgatgatataa 19850314  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaagtatcaccttgagtctca 290  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||| ||| ||| |   | |||||||||||||||    
T  19850313 aatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctca 19850240  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 20005917 - 20006112
Alignment:
Q  30 ttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttccccattgatgtcat 129  Q
    ||||| |||||||  |||| |||||||||||  ||||| | ||||||||||| | |||| | || |||||||||   ||||  ||||||||| ||| |||    
T  20005917 ttaaggttagaaaatactcgttcaagcttcttaatcctctcttcaagatcaaatgccatatctaatgtaaaaggactaacaccttccccattaatggcat 20006016  T
Q  130 tgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataaaatcaccaaa 226  Q
     |||||||||||||||| ||||| || | ||||||||||||||||  |  |||||||| | ||||||| | ||||||||||||||||||||||||||    
T  20006017 cgacatcatttctatcacaaaatggatttttgatttcatcttcattcccacatccagcta-ttcaccaccaacatttgatgatataaaatcaccaaa 20006112  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19813728 - 19813664
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 81  Q
    ||||||||||||||| || ||||||| |||||||||||| ||||| |||||||||||||||||||    
T  19813728 aaatcttgcttctttgagcttagaaaacactctttcaagtttctcaatcctgttttcaagatcaa 19813664  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 14855592 - 14855632
Alignment:
Q  136 catttctatcataaaatagactcttgatttcatcttcatca 176  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  14855592 catttctatcacaaaatagactcttgatttcatcttcatca 14855632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 20019605 - 20019645
Alignment:
Q  136 catttctatcataaaatagactcttgatttcatcttcatca 176  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  20019605 catttctatcacaaaatagactcttgatttcatcttcatca 20019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 19968691 - 19968651
Alignment:
Q  136 catttctatcataaaatagactcttgatttcatcttcatca 176  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  19968691 cattcctatcacaaaatagactcttgatttcatcttcatca 19968651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19968801 - 19968737
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 81  Q
    ||||||||||| ||| || |||| |||| |||||||||| |||| |||||||||||||| |||||    
T  19968801 aaatcttgcttgtttgagcttagcaacctctctttcaagtttcttgatcctgttttcaacatcaa 19968737  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 19813629 - 19813562
Alignment:
Q  149 aaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    |||| |||||||||||||||||||||| |  |||||||| |||||||   |||||| |||||||||||    
T  19813629 aaatggactcttgatttcatcttcatccccacatccagctatttcacttgccacatctgatgatataa 19813562  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 19963971 - 19963929
Alignment:
Q  199 ccacatttgatgatataaaatcaccaaattcagaattagacaa 241  Q
    |||||||||||||||||||||||| |||||||| | |||||||    
T  19963971 ccacatttgatgatataaaatcacaaaattcaggactagacaa 19963929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 20026453 - 20026495
Alignment:
Q  199 ccacatttgatgatataaaatcaccaaattcagaattagacaa 241  Q
    |||||||||||||||||||||||| |||||||| | |||||||    
T  20026453 ccacatttgatgatataaaatcacaaaattcaggactagacaa 20026495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19964144 - 19964080
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 81  Q
    |||||||||||||||||| |||| |||| ||| |||||| ||||  || ||||||||||| ||||    
T  19964144 aaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaagttcaa 19964080  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 20026280 - 20026344
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 81  Q
    |||||||||||||||||| |||| |||| ||| |||||| ||||  || ||||||||||| ||||    
T  20026280 aaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaagttcaa 20026344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 27473266 - 27473015
Alignment:
Q  17 aaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaatttccatgtttagtgtaaaaggctcaacaatttcc 116  Q
    |||||||||||||||||| ||||| | |  | ||||||||||||  ||||||||||||||||||| |||||||| || | |||| || |||| | |||||    
T  27473266 aaatcttgcttctttaagcttagagaaccttttttcaagcttctgaatcctgttttcaagatcaaattccatgtatactctaaatggatcaatactttcc 27473167  T
Q  117 ccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgatataa 216  Q
    ||| ||||||||||||||||||||  |||| |||||  | ||||||||||||||||||| |   |||  || ||||||||||||||||||||||||||||    
T  27473166 ccactgatgtcattgacatcattttcatcacaaaatgaattcttgatttcatcttcatccccatatcttgctatttcaccatccacatttgatgatataa 27473067  T
Q  217 aatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagct 268  Q
    ||||||||| |||||||||||| || ||||||| |||||||||| |||||||    
T  27473066 aatcaccaagttcagaattagaaaaagagactttgtttctgataccatagct 27473015  T

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