View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_36 (Length: 335)
Name: NF19748_high_36
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 140 - 317
Target Start/End: Original strand, 25628236 - 25628413
Alignment:
| Q |
140 |
ctttcgttcttcaattgaggcaacgtatatgactttgtacaagtgagagattaaagttgagttgcacgagtaaagttggaggtttttggggacacctatt |
239 |
Q |
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| T |
25628236 |
ctttcgttcttcaattgaggcaacatatatgactttgtacaagtgagagattaaagttgagttgcacgagtaaagttggaggtttttggggacacctatt |
25628335 |
T |
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| Q |
240 |
agggagtaaaaatggagaagataagttatattatcaatgtgaaaatataactttgatctacatagatgaacaatgaaa |
317 |
Q |
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| T |
25628336 |
agggagtaaaaatggagaagataagttatattatcaatgtgaaaatataactttgatctacatagatgaacaatgaaa |
25628413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 25623393 - 25623526
Alignment:
| Q |
1 |
atttagtagaataattaataattgaaagaaatgtgtgtaacacaggaagtcgcaattagcacgtagtgatgcattagactgatacttgaaattttctggt |
100 |
Q |
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| T |
25623393 |
atttagtagaataagtaataattgaaagaaatgtgtgtaacacaggaagtcgcaattagcacgtagtgatgcattagactgatacttcaaattttctggt |
25623492 |
T |
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| Q |
101 |
cgaacttctctgaactactacttacaatttcaat |
134 |
Q |
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| T |
25623493 |
cgaacttctctgaactactacttacaatttcaat |
25623526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 8434112 - 8434074
Alignment:
| Q |
279 |
tgaaaatataactttgatctacatagatgaacaatgaaa |
317 |
Q |
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| T |
8434112 |
tgaaaatataactttgatctccatagatgaaaaatgaaa |
8434074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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