View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_39 (Length: 327)

Name: NF19748_high_39
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_39
NF19748_high_39
[»] scaffold0090 (1 HSPs)
scaffold0090 (9-308)||(8328-8627)
[»] chr3 (11 HSPs)
chr3 (19-305)||(13854872-13855159)
chr3 (34-95)||(20342485-20342546)
chr3 (34-116)||(1107508-1107590)
chr3 (34-95)||(5483495-5483556)
chr3 (30-99)||(5488941-5489010)
chr3 (30-99)||(5501788-5501857)
chr3 (34-99)||(5524656-5524721)
chr3 (34-95)||(5829386-5829447)
chr3 (34-79)||(1050411-1050456)
chr3 (34-95)||(5445166-5445227)
chr3 (34-95)||(5850131-5850192)
[»] chr8 (1 HSPs)
chr8 (31-158)||(23555533-23555660)
[»] chr5 (3 HSPs)
chr5 (34-96)||(22689410-22689472)
chr5 (218-308)||(28419661-28419751)
chr5 (19-77)||(28419897-28419955)
[»] chr4 (1 HSPs)
chr4 (29-103)||(31697078-31697152)
[»] chr2 (2 HSPs)
chr2 (37-80)||(2712642-2712685)
chr2 (54-99)||(34218961-34219006)


Alignment Details
Target: scaffold0090 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 8328 - 8627
Alignment:
Q  9 gtccaagaatatattactcactttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaatagaatg 108  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328 gtccaataaaatattactcactttcagatctctgtgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaatagaatg 8427  T
Q  109 ttaaagcgtgcagaccagtccaacaatttactttgaaatggatctgtaaagtgtgttcaataagtttattagtaatttctttacataaattttaaactta 208  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8428 ttaaagcgtgcagaccaatccaacaatttactttgaaatggatctgtaaagtgtgttcaatatgtttattagtaatttctttacataaattttaaactta 8527  T
Q  209 tatcataccaaatattacactttgcaaaaaattactcaccaaaaagaaatgtatcgagacttttgttggacatgtattcataaatcaacattttctcatc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528 tatcataccaaatattacactttgcaaaaaattactcaccaaaaagaaatgtatcgagacttttgttggacatgtattcataaatcaacattttctcatc 8627  T

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Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 13855159 - 13854872
Alignment:
Q  19 atattactcactttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaatagaatgttaaagcgtg 118  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  13855159 atattactcactttaagatctctgtgtatgatccgtaatcttgaatcttgatgaagataaagaagccctcgagcaattccaaatataatgttgaagcgtg 13855060  T
Q  119 cagaccagtccaacaatttactttgaaatggatctgtaaagtgtgttcaataagtttattagtaatttctttacataa-attttaaacttatatcatacc 217  Q
    ||||||| |||||||||||||||||||||||||||||||||||  | ||||| |||||   ||  ||||||| ||||| |   |||||| ||||||| ||    
T  13855059 cagaccaatccaacaatttactttgaaatggatctgtaaagtgcctccaatacgtttacatgtcgtttctttgcataacaaaataaactaatatcattcc 13854960  T
Q  218 aaatattacactttgcaaaaaattactcaccaaaaagaaatgtatcgagacttttgttggacatgtattcataaatcaacattttctc 305  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  13854959 aaatattacacttcgcgaaaaattactcaccaaaaagaaatgaatcgagacttttgttggacatgtattcatatatcaacattttctc 13854872  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 20342485 - 20342546
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaat 95  Q
    |||||||||||||||||||||| | | ||||||||||| ||||| |||||||||||||||||    
T  20342485 agatctctatgtatgattcgtagtgtagaatcttgatggagatacagaagcccccgagcaat 20342546  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 1107590 - 1107508
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaatagaatgttaaagcg 116  Q
    ||||||||||||||||| |  ||||| ||||||||||||||||||| ||| || ||||| |||||| |||  |||||||||||    
T  1107590 agatctctatgtatgatcctcaatctagaatcttgatgaagataaataagtccacgagcgattccacatatgatgttaaagcg 1107508  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5483495 - 5483556
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaat 95  Q
    ||||||||||||||||||| |||| | ||||| ||||| ||||| || ||||||||||||||    
T  5483495 agatctctatgtatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaat 5483556  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 5488941 - 5489010
Alignment:
Q  30 tttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattcca 99  Q
    ||||| ||||||||||||||||| || | | ||||||||||||||||| |  ||||| ||||||||||||    
T  5488941 tttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattcca 5489010  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 5501788 - 5501857
Alignment:
Q  30 tttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattcca 99  Q
    ||||| ||||||||||||||||| || | | ||||||||||||||||| |  ||||| ||||||||||||    
T  5501788 tttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattcca 5501857  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 5524656 - 5524721
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattcca 99  Q
    ||||||||||||||||||| |  | | ||||||||||||||||| || ||||| ||||||||||||    
T  5524656 agatctctatgtatgattctttgtgtagaatcttgatgaagatatagcagccctcgagcaattcca 5524721  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 5829447 - 5829386
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaat 95  Q
    ||||||||||||||||| |  ||| ||||||||||||| |||||||| ||||| ||||||||    
T  5829447 agatctctatgtatgatcctcaatgttgaatcttgatggagataaagcagcccacgagcaat 5829386  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 1050456 - 1050411
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaa 79  Q
    ||||||| ||||||||| | |||||| |||||||||||||||||||    
T  1050456 agatctcgatgtatgatccttaatctagaatcttgatgaagataaa 1050411  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5445166 - 5445227
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaat 95  Q
    ||||||||||| ||||||| |||| | ||||| ||||| ||||| || ||||||||||||||    
T  5445166 agatctctatgaatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaat 5445227  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 5850192 - 5850131
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaat 95  Q
    ||||||||||||||||||| |||| | ||||| ||||| ||||| || ||||| ||||||||    
T  5850192 agatctctatgtatgattcttaatgtagaatcctgatggagatacagcagccctcgagcaat 5850131  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 23555660 - 23555533
Alignment:
Q  31 ttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaatagaatgttaaagcgtgcagaccagtcca 130  Q
    |||| ||||||||||||||| |  ||||||||||||||||| | ||||||||| || |||||||||||| | |  |||||||| || |  ||||| || |    
T  23555660 ttcaaatctctatgtatgatcctcaatcttgaatcttgatgtaaataaagaagacctcgagcaattccatacaagatgttaaaacgcgtcgaccaatcta 23555561  T
Q  131 acaatttactttgaaatggatctgtaaa 158  Q
    ||| ||||||||||| ||||||||||||    
T  23555560 acagtttactttgaattggatctgtaaa 23555533  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 22689410 - 22689472
Alignment:
Q  34 agatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaatt 96  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||    
T  22689410 agatccctatgtatgattcttaatatagaatcttgatgaagataaagaagtcctcgagcaatt 22689472  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 28419751 - 28419661
Alignment:
Q  218 aaatattacactttgcaaaaaattactcaccaaaaagaaatgtatcgagacttttgttggacatgtattcataaatcaacattttctcatc 308  Q
    |||||||| |||||  ||||||||||  |||||||||||||| ||| || |||||||| | |||||||||||| || |||| ||| |||||    
T  28419751 aaatattagacttttaaaaaaattacaaaccaaaaagaaatgaatcaaggcttttgtttggcatgtattcatagattaacagtttttcatc 28419661  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 28419955 - 28419897
Alignment:
Q  19 atattactcactttcagatctctatgtatgattcgtaatcttgaatcttgatgaagata 77  Q
    ||||||||| | |||| ||| ||||||||||| | |||||| |||||||||||||||||    
T  28419955 atattactcgccttcaaatccctatgtatgatccttaatctagaatcttgatgaagata 28419897  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 31697152 - 31697078
Alignment:
Q  29 ctttcagatctctatgtatgattcgtaatcttgaatcttgatgaagataaagaagcccccgagcaattccaaata 103  Q
    |||| ||||||||||| || |||| |||||  ||||||||||||||||| | ||| |||| ||||||||||||||    
T  31697152 ctttgagatctctatgaataattcttaatcgagaatcttgatgaagatacacaagtcccctagcaattccaaata 31697078  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 2712642 - 2712685
Alignment:
Q  37 tctctatgtatgattcgtaatcttgaatcttgatgaagataaag 80  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaag 2712685  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 34219006 - 34218961
Alignment:
Q  54 taatcttgaatcttgatgaagataaagaagcccccgagcaattcca 99  Q
    |||||| ||||||| ||||||||||||||| || ||||||||||||    
T  34219006 taatctagaatcttcatgaagataaagaaggcctcgagcaattcca 34218961  T

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