View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_high_4 (Length: 632)
Name: NF19748_high_4
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 218 - 617
Target Start/End: Original strand, 11041475 - 11041874
Alignment:
| Q |
218 |
actcaagcttgaaattatcacttaccggtgtcaacatttccgacagtggcttgcttgtacaatccataaaggataagcaaatcctcgtttgatgggctct |
317 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11041475 |
actcaagctcgaaattatcgcttaccggtgtcaacatttccgacagtggcttgcttgtacaatccataaaggataagcaaatcctcatttgatgggctct |
11041574 |
T |
|
| Q |
318 |
ctgtcaaagtcttgactttggcggcatgctgctcaaaatcctcctgcatcacattaaccaacaaacgtgtgatgcttgaagtaccatttactttcactca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11041575 |
ctgtcaaagtcttgactttggcggcatgctgctcaaaatcctcctgcatcacattaaccaacaaacgtgtgatgcttgaagtaccatttacttttactca |
11041674 |
T |
|
| Q |
418 |
taagcacaacatgaagcatctagctgagtatatataacaagttcaaattgagaacataagcacgcagaaagttttgatacaaacttccatattcactaca |
517 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11041675 |
taagcacaaaatcaagcatctagctgagtatatataacaagttcaaattgagaacataaacacgcagaaagttttgatacaaacttccatattcactaca |
11041774 |
T |
|
| Q |
518 |
aagatcaaatttaacagtcctgcataagattaaccaagcactcatttgaacaacagggttctttgataatataaccaaataaaattcccctttacatatt |
617 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11041775 |
aagataaaatttaacagtcctgcataagattaaccaagcactcatttgaacaacagggttctttgataatataaccaaataaaattcccctttacatatt |
11041874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 11041238 - 11041443
Alignment:
| Q |
14 |
aaaggcaaagtgaggctttaagataggtgagatctaacaatgaaaaaatatatgaggaggcatcatacataatatttttgtcaggatcaaaataaagtcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11041238 |
aaaggcaaagtgaggctttaagataggtgagatctaacaatgaacaaatatatgaggaggcatcatacataatatttttgtcaggatcaaaataaagtcg |
11041337 |
T |
|
| Q |
114 |
aggctatgggctaggcagatagctgagttgggtaggttgaggaacctaaagactaaagtaagtaagggcttgtttctcttgaagcttatgtcggtcctga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
11041338 |
aggctatgggctaggcagatagctgagttgggtaggttgaggaacctaaagactaaagtaagtgacggcttgtttctcttgaagcttatgtcggtcctga |
11041437 |
T |
|
| Q |
214 |
ccacac |
219 |
Q |
| |
|
|||||| |
|
|
| T |
11041438 |
ccacac |
11041443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University