View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_40 (Length: 314)
Name: NF19748_high_40
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 42383098 - 42383383
Alignment:
| Q |
11 |
cacagacatatgttaatttttagtttttgaaaagtcaataatttattgataaagggatgcaggaagaattgtttttggtagttgaaaaagtgtttctagg |
110 |
Q |
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| T |
42383098 |
cacacacatatgttaatttt--gtttttgaaaagtcaatgatttattgataaagggatgcatgaagaattgtttttggtagttgaaaaagtgtttatagg |
42383195 |
T |
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| Q |
111 |
ttcgtcagttcagtgcatttccttcccgtgtatgaaataattattttttctgcaatatatcacggataatgtacctttcaattgaaggctcggctggata |
210 |
Q |
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| T |
42383196 |
ttcgtcagttcagtgcatttccttcccgtgtatgaaataattattttttgtgcaatatatcacggataatgtacctttcaattgaaggctcggctggata |
42383295 |
T |
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| Q |
211 |
tccaacannnnnnnnnnnnnnnatagaaatgatattgtcaacctagaagattacattggagtaagttggttccacgacaaagtggtaag |
299 |
Q |
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| T |
42383296 |
ttcaaca-ttttttttatttttatagaaatgatattgtcaacctagaagattacattggagtaagttggttccacgacaaagtggtaag |
42383383 |
T |
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