View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_high_45 (Length: 309)
Name: NF19748_high_45
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_45 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 2602778 - 2603073
Alignment:
| Q |
14 |
caaagggacattcatattaacatcgccttgaaatagtgaagcttgatctgaggtcaacatggaaccccgcaaacgcaacgtaacaccgtttccttttgta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
2602778 |
caaagggacattcatattaacatcgccttgaaatagtgaagcttgatcagaggtcaacatggaaccccgcaaacgcaaagaaacaccatttccttttgta |
2602877 |
T |
|
| Q |
114 |
attgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtggattcctcgggggaattaccg |
213 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2602878 |
attgaaagcaagtatccaccaggaattattccatcaataatgccagtgaattccgttcctatactgacttcttcatgtggattcctcgggggaattaccg |
2602977 |
T |
|
| Q |
214 |
gtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaattatttgtcatttacttaaaat |
309 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602978 |
ttgtatcattgtcatggttgtgatgtttcccttgtagtccactcattgttcttttatctctgcattaacataaattatttgtcatttacttaaaat |
2603073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 2616300 - 2616588
Alignment:
| Q |
14 |
caaagggacattcatattaacatcgccttgaaatagtgaagcttgatctgaggtcaacatggaaccccgcaaacgcaacgtaacaccgtttccttttgta |
113 |
Q |
| |
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|||| ||||||||||||||||||| |||| | |||||||| |||||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||| || |
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| T |
2616300 |
caaatggacattcatattaacatcaccttcagttagtgaaggttgatcagaggtcaacatggaacctcgcaaacgcaaagtaacaccattttctttttta |
2616399 |
T |
|
| Q |
114 |
attgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtggattcctcgggggaattaccg |
213 |
Q |
| |
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|||| |||||||| ||| ||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2616400 |
attgttagcaagtatccaacaggaattattccatcaataacaccagtgaattcc-----tacactgacttcttcatgtggattcgtcgggagaattaccg |
2616494 |
T |
|
| Q |
214 |
gtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaattatttgtcatttacttaaa |
307 |
Q |
| |
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||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
2616495 |
gtgtatcattgtcatggctgagatgtttcccttgtagtccactcattgttcttttatctctgcattaaaataaattatttatcattcacttaaa |
2616588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 87 - 299
Target Start/End: Original strand, 2593668 - 2593880
Alignment:
| Q |
87 |
cgcaacgtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttctt |
186 |
Q |
| |
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||||| |||||||| |||||||||||||||| |||||||| ||||||| |||||||| ||| ||||| | |||| |||| |||||| |||| ||||| |
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| T |
2593668 |
cgcaaagtaacaccatttccttttgtaattgtgagcaagtatccaccaggaattattcaatcgataacacaagtgatttccattcctagcctgatttctt |
2593767 |
T |
|
| Q |
187 |
catgtggattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataa |
286 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||| |
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| T |
2593768 |
cacgtggattcctgaggggaattaccggtgtatcattgtcatggttgtgatgtttcccttgtattccactcattgttcttttatctctgtaataacataa |
2593867 |
T |
|
| Q |
287 |
attatttgtcatt |
299 |
Q |
| |
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||||||| ||||| |
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| T |
2593868 |
attatttttcatt |
2593880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 10304259 - 10304064
Alignment:
| Q |
87 |
cgcaacgtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttctt |
186 |
Q |
| |
|
||||| |||||||| ||||||||| |||||| || ||||| ||||||| |||||||||||| ||||| || ||||||| | |||||| |||| ||||| |
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| T |
10304259 |
cgcaaagtaacaccatttccttttctaattgtgagaaagtatccaccaggaattattccatcgataacaccagtgaatttcattcctaacctgatttctt |
10304160 |
T |
|
| Q |
187 |
catgtggattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaac |
282 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||| |||||| |
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|
| T |
10304159 |
cacgtggattcctcgggggaattaccgatgtatcattgtgatggttgtgatgtttcaaatgtagtccactcgttgttcttttatctctgtattaac |
10304064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 2594139 - 2593935
Alignment:
| Q |
87 |
cgcaacgtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattatt-ccatcaataacgccggtgaattccgttcctacactgacttct |
185 |
Q |
| |
|
||||| |||||||| ||||||||| |||||| || ||||| ||||||||||||||| ||||| ||||| || ||||||||| |||||| ||| |||| |
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|
| T |
2594139 |
cgcaaagtaacaccatttccttttctaattgtgagaaagtatccaccagaaattatttccatcgataacaccagtgaattccattcctagcgtgatttct |
2594040 |
T |
|
| Q |
186 |
tcatgtggattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacata |
285 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||| | ||||| | || |||||| || |
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|
| T |
2594039 |
tcacgtggattcctcgggggaattactggtgtatcattgtgatggttgtgatgtttcaaatgtaatccactcattgttagtttatttttgtattaaccta |
2593940 |
T |
|
| Q |
286 |
aatta |
290 |
Q |
| |
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||||| |
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|
| T |
2593939 |
aatta |
2593935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 10303790 - 10304001
Alignment:
| Q |
88 |
gcaacgtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttc |
187 |
Q |
| |
|
|||| |||||||| ||||||||| | |||| | |||||| ||||||| ||||| || ||| ||||| | |||| |||| || || |||| |||||| |
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|
| T |
10303790 |
gcaaagtaacaccatttccttttcttattgtgatcaagtatccaccaggaattactcaatcgataacacaagtgatttccatttgtagcctgatttcttc |
10303889 |
T |
|
| Q |
188 |
atgtggattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaa |
287 |
Q |
| |
|
| | ||||| || ||||| ||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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|
| T |
10303890 |
acgaggattacttgggggtattactggtgtatcatggtcatggctgtgatgtttcccttgtagtccactcattgttcttttatctctgtaataacataaa |
10303989 |
T |
|
| Q |
288 |
ttatttgtcatt |
299 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10303990 |
ttatttgtcatt |
10304001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 93 - 299
Target Start/End: Complemental strand, 22193100 - 22192894
Alignment:
| Q |
93 |
gtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtg |
192 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||| ||| ||| |||||||||||| |||| || ||||||||| |||||| ||| ||||||| ||| |
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|
| T |
22193100 |
gtaacaccatttccttttttcattgtgagcaagtatccagcaggaattattccatcgataataccagtgaattccattcctatcttgatttcttcacgtg |
22193001 |
T |
|
| Q |
193 |
gattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaattatt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| | | |||||||||||||| |
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|
| T |
22193000 |
gattcctcgggggaattaccggtgtatcattgtcatggttgtgatgtttcccttgtagtctactcattgttcttttatctcagtaataacataaattatt |
22192901 |
T |
|
| Q |
293 |
tgtcatt |
299 |
Q |
| |
|
||||||| |
|
|
| T |
22192900 |
tgtcatt |
22192894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 22230234 - 22230445
Alignment:
| Q |
88 |
gcaacgtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttc |
187 |
Q |
| |
|
|||| |||| ||| ||||||||| |||||| |||||||| ||||||| |||||||| ||| ||||| | |||| || | |||||| |||| |||||| |
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|
| T |
22230234 |
gcaaagtaataccatttccttttctaattgtgagcaagtatccaccaggaattattcaatcgataacacaagtgattttcattcctagcctgatttcttc |
22230333 |
T |
|
| Q |
188 |
atgtggattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaa |
287 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||| ||||| |
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|
| T |
22230334 |
aagtggattcctcgggggaattactggtgtatcattgtcatggttgtgatgtttcctttgtagtccgctcattgttcttttatctctgcaataatataaa |
22230433 |
T |
|
| Q |
288 |
ttatttgtcatt |
299 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22230434 |
ttatttgtcatt |
22230445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 290
Target Start/End: Complemental strand, 22230697 - 22230500
Alignment:
| Q |
93 |
gtaacaccgtttccttttgtaattgaaagcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtg |
192 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||| ||||||| |||||||||||| ||||| | ||||||||| |||||| |||| || |||| ||| |
|
|
| T |
22230697 |
gtaacaccatttccttttctaattgtgagcaagtatccaccaggaattattccatcgataacactagtgaattccattcctagcctgattttttcacgtg |
22230598 |
T |
|
| Q |
193 |
gattcctcgggggaattaccggtgtatcattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaatta |
290 |
Q |
| |
|
|||| || |||||||||| ||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| |||||| ||||||| |
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|
| T |
22230597 |
gattgcttgggggaattataggtgtatcattgtgatggttgtgatgtttcaaatgtagtccactcgttactcttttatctctgtattaacctaaatta |
22230500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 27170267 - 27170544
Alignment:
| Q |
21 |
acattcatattaacatcgccttgaaatagtgaagcttgatctgaggtcaacatggaaccccgcaaacgcaacgtaacaccgtttccttttgtaattgaaa |
120 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||| || || ||||| |||||||||||||||||| |||||||| ||||| | ||||| | |
|
|
| T |
27170267 |
acattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaa------gtaacaccatttcccactcgaattgtga |
27170360 |
T |
|
| Q |
121 |
gcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtggattcctcgggggaattaccggtgtatc |
220 |
Q |
| |
|
||||||| |||| | || ||||||||| ||||| | ||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
27170361 |
gcaagtatccactatgaaatattccatcgataacactagtgaattcctttcctacctcgatttcttcatgtggattcttcgggggaattaccggtgtacc |
27170460 |
T |
|
| Q |
221 |
attgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaattatttgtcatttactt |
304 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
27170461 |
attgtgatggttgtgatgtttccaatatagtccactcattgttcttttatctctgtattaacataaattatttttcattcactt |
27170544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 27170950 - 27170776
Alignment:
| Q |
120 |
agcaagtacccaccagaaattattccatcaataacgccggtgaattccgttcctacactgacttcttcatgtggattcctcgggggaattaccggtgtat |
219 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||| || |||| |||| |||||| |||| |||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
27170950 |
agcaagtatccaccagaaaatattccatcgataacaccagtgatttcctctcctaccctgatttcttcatgtggattcctcggggggattaccagtatat |
27170851 |
T |
|
| Q |
220 |
cattgtcgtggttgtgatgtttcccttgtagtccactcattgctcttttatctctgcattaacataaattatttg |
294 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||| |||||||||| || |||||| ||||||||||| |
|
|
| T |
27170850 |
cattgtgatggttttgatgtttcctatgtagtccactcattgttcttttatctatgtattaacttaaattatttg |
27170776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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