View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_46 (Length: 304)

Name: NF19748_high_46
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_46
NF19748_high_46
[»] chr4 (1 HSPs)
chr4 (1-287)||(4162118-4162411)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 4162118 - 4162411
Alignment:
Q  1 gattaattaaagcttataaagcaaggttaacacggcaataccaaaaaggagggtcgtaagagtgaatactaaggatgatcataactgaaaaggctatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4162118 gattaattaaagcttataaagcaaggttaacacggcaataccaaaaaagagggtcgtaagagtgaatactaaggatgatcataactgaaaaggctatatt 4162217  T
Q  101 atagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaagcaaaatgggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4162218 atagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaagcaaaatgggaa 4162317  T
Q  201 attgatttgccaacagatgtaatcatataaaaggc---------tataacaagctgtcacatataatcgaacctttcgcttgcatcagttgtgact 287  Q
    ||||||||||||||||||| ||  | |||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4162318 attgatttgccaacagatgcaa--acataaaaggctatacagcatataacaagctgtcacatataatcggacctttcgcttgcatcagttgtgact 4162411  T

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