View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_49 (Length: 299)

Name: NF19748_high_49
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_49
NF19748_high_49
[»] chr6 (2 HSPs)
chr6 (68-265)||(20475040-20475237)
chr6 (134-190)||(9530542-9530598)
[»] chr1 (1 HSPs)
chr1 (125-185)||(8792967-8793027)
[»] chr8 (3 HSPs)
chr8 (134-197)||(10028902-10028965)
chr8 (101-190)||(21136582-21136670)
chr8 (103-167)||(29490604-29490667)
[»] chr5 (2 HSPs)
chr5 (131-177)||(36184524-36184570)
chr5 (101-158)||(9900225-9900281)
[»] scaffold0154 (1 HSPs)
scaffold0154 (131-200)||(6245-6314)
[»] chr7 (1 HSPs)
chr7 (134-183)||(30935367-30935416)
[»] chr3 (1 HSPs)
chr3 (134-190)||(31178860-31178916)
[»] chr2 (2 HSPs)
chr2 (125-177)||(17672952-17673004)
chr2 (141-185)||(18561612-18561656)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 68 - 265
Target Start/End: Complemental strand, 20475237 - 20475040
Alignment:
Q  68 tttatgtttttattacacgaggagggacttaatattgagaaacttttgaataagataaaagagtattttgaaatattaataaagttgaagactaatttaa 167  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20475237 tttatgtttttattacacgatgagggacttaatattgagaaacttttgaatatgataaaagattattttgaaatattaataaagttgaagactaatttaa 20475138  T
Q  168 gagtaacttataaagacagagactattttgatatttcatccgaaaaataaataatcaatagtttattgattcaattatgcttgtattttaattatgtg 265  Q
     ||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20475137 aagtaatttataaagacagagactaatttgatatttcctccgaaaaataaataaccaatagtttattgattcaattatgcttgtattttaattatgtg 20475040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 9530598 - 9530542
Alignment:
Q  134 tttgaaatattaataaagttgaagactaatttaagagtaacttataaagacagagac 190  Q
    ||||||||||||||||||||  |||||||||| ||| | ||||| ||||||||||||    
T  9530598 tttgaaatattaataaagttagagactaatttgagaatgacttacaaagacagagac 9530542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 8793027 - 8792967
Alignment:
Q  125 aaagagtattttgaaatattaataaagttgaagactaatttaagagtaacttataaagaca 185  Q
    ||||| |||||||||||||||||| ||||| |||||||||| ||||| ||||| |||||||    
T  8793027 aaagattattttgaaatattaatagagttggagactaatttgagagtgacttacaaagaca 8792967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 10028902 - 10028965
Alignment:
Q  134 tttgaaatattaataaagttgaagactaatttaagagtaacttataaagacagagactattttg 197  Q
    |||||||||||||||||||  ||||||||||| ||||| || || ||||||| |||||| ||||    
T  10028902 tttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagacaaagactaatttg 10028965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 21136670 - 21136582
Alignment:
Q  101 attgagaaacttttgaataagataaaagagtattttgaaatattaataaagttgaagactaatttaagagtaacttataaagacagagac 190  Q
    ||||| ||||||||||  |||||||  || |||||||||||||||||| |||  ||||||||||| ||| | ||||  ||||||||||||    
T  21136670 attgaaaaacttttgacaaagataag-gactattttgaaatattaatagagtcaaagactaatttgagaatgactttaaaagacagagac 21136582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 29490604 - 29490667
Alignment:
Q  103 tgagaaacttttgaataagataaaagagtattttgaaatattaataaagttgaagactaatttaa 167  Q
    ||||||||||||||  |||||||| || |||||| |||||||||||||||   ||||||||||||    
T  29490604 tgagaaacttttgacgaagataaa-gattattttaaaatattaataaagtcagagactaatttaa 29490667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 36184570 - 36184524
Alignment:
Q  131 tattttgaaatattaataaagttgaagactaatttaagagtaactta 177  Q
    |||||||||||||||||||||||  |||||||||| ||||| |||||    
T  36184570 tattttgaaatattaataaagttatagactaatttgagagtgactta 36184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 9900281 - 9900225
Alignment:
Q  101 attgagaaacttttgaataagataaaagagtattttgaaatattaataaagttgaaga 158  Q
    ||||||||||||||||  ||||||||| | |||||| ||||||||||| |||||||||    
T  9900281 attgagaaacttttgacaaagataaaa-attattttaaaatattaatagagttgaaga 9900225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 6245 - 6314
Alignment:
Q  131 tattttgaaatattaataaagttgaagactaatttaagagtaacttataaagacagagactattttgata 200  Q
    |||||||||||||||||| |||  ||||||||||| ||| ||||||| ||| |||| ||| | |||||||    
T  6245 tattttgaaatattaatagagtcaaagactaatttgagaataacttacaaaaacagggaccaatttgata 6314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 30935367 - 30935416
Alignment:
Q  134 tttgaaatattaataaagttgaagactaatttaagagtaacttataaaga 183  Q
    ||||||||||||||||||| | |||||||||| ||||| ||||| |||||    
T  30935367 tttgaaatattaataaagtcggagactaatttgagagtgacttacaaaga 30935416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 31178860 - 31178916
Alignment:
Q  134 tttgaaatattaataaagttgaagactaatttaagagtaacttataaagacagagac 190  Q
    |||||||| |||||||| | | |||||||||||||| |||||||  |||||||||||    
T  31178860 tttgaaattttaataaaatcggagactaatttaagaataacttaccaagacagagac 31178916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 17673004 - 17672952
Alignment:
Q  125 aaagagtattttgaaatattaataaagttgaagactaatttaagagtaactta 177  Q
    ||||| |||||||||||||||||| | ||| |||||||||| ||||| |||||    
T  17673004 aaagactattttgaaatattaatagaattggagactaatttgagagtgactta 17672952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 18561656 - 18561612
Alignment:
Q  141 tattaataaagttgaagactaatttaagagtaacttataaagaca 185  Q
    ||||||||||||||||||||||||| ||| | ||||| |||||||    
T  18561656 tattaataaagttgaagactaatttgagaatgacttacaaagaca 18561612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University