View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_5 (Length: 632)
Name: NF19748_high_5
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 245 - 623
Target Start/End: Original strand, 42804853 - 42805231
Alignment:
| Q |
245 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
344 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42804853 |
atataagtttattgccatttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttctt |
42804952 |
T |
|
| Q |
345 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42804953 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
42805052 |
T |
|
| Q |
445 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
544 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805053 |
tattcacaacgcatttgtttataatttttcagtatttcttggaccacaggatatcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
42805152 |
T |
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| Q |
545 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
623 |
Q |
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| T |
42805153 |
accaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
42805231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 245 - 623
Target Start/End: Original strand, 42762451 - 42762821
Alignment:
| Q |
245 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
344 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| | |
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| T |
42762451 |
atataagtttattgccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttctt |
42762550 |
T |
|
| Q |
345 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
444 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42762551 |
ctatgttactttggattgaagttttaatttcatttatgtcgtttttaggggttgaacctatcccgccttcataagatgccctgtcatgaatagcactatt |
42762650 |
T |
|
| Q |
445 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
544 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42762651 |
tattcacaacgtatttgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacaatgaaaatgctgtgtatgtcaact |
42762750 |
T |
|
| Q |
545 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
623 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
42762751 |
gccaaggatttgtgttgatgcccttaccattta--------ttatatttttaatacatctactagaagtttgatgatgt |
42762821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 42760945 - 42761156
Alignment:
| Q |
17 |
caatttccgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggtttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760945 |
caatttccgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggtttt |
42761044 |
T |
|
| Q |
117 |
ggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggggag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42761045 |
ggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggtgag |
42761144 |
T |
|
| Q |
217 |
attggtgatgct |
228 |
Q |
| |
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|||||||||||| |
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| T |
42761145 |
attggtgatgct |
42761156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 42803347 - 42803558
Alignment:
| Q |
17 |
caatttccgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggtttt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42803347 |
caatttccgcctttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttctggtacgtgtaaggtttt |
42803446 |
T |
|
| Q |
117 |
ggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggggag |
216 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || || |
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| T |
42803447 |
ggtaggaaagtcggttcacgggtcggtgtttaggtgtggtttggatcaggatttgtttatgggtactactttgattgatatgtatggtaaatgtggacag |
42803546 |
T |
|
| Q |
217 |
attggtgatgct |
228 |
Q |
| |
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||| |||||||| |
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| T |
42803547 |
attagtgatgct |
42803558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 249 - 436
Target Start/End: Original strand, 33048811 - 33048988
Alignment:
| Q |
249 |
aagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctat |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33048811 |
aagtttattgccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctat |
33048900 |
T |
|
| Q |
349 |
gttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
436 |
Q |
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| T |
33048901 |
gttacttaggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 6170821 - 6170723
Alignment:
| Q |
111 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
209 |
Q |
| |
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|||| |||| ||||||| |||||||| |||||| || | ||||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| |
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| T |
6170821 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttggatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6170723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 6250183 - 6250085
Alignment:
| Q |
111 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
209 |
Q |
| |
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|||| |||| ||||||| |||||||| |||||| || | ||||||||| ||||||||| |||||||||| |||| |||| || |||||||||||||||| |
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|
| T |
6250183 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttcgatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6250085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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