View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_57 (Length: 270)

Name: NF19748_high_57
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_57
NF19748_high_57
[»] chr5 (1 HSPs)
chr5 (23-255)||(40200114-40200347)
[»] chr7 (2 HSPs)
chr7 (57-140)||(36677706-36677789)
chr7 (57-132)||(31956940-31957015)
[»] chr3 (1 HSPs)
chr3 (63-140)||(10346423-10346500)
[»] chr1 (2 HSPs)
chr1 (57-113)||(33315235-33315291)
chr1 (61-139)||(17321968-17322046)
[»] chr8 (1 HSPs)
chr8 (61-140)||(9808655-9808734)
[»] chr4 (2 HSPs)
chr4 (69-140)||(6969713-6969784)
chr4 (63-129)||(1311237-1311303)
[»] chr2 (1 HSPs)
chr2 (57-140)||(6860591-6860675)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 40200347 - 40200114
Alignment:
Q  23 acgttaacgaggtcgcttatgagttagtgcagacagctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  40200347 acgttaacgaggttgcttatgagttagtgcagacagctcccatattatagatgatgctcccttatgtatttgaaacattatagctaatgaaatgcgatga 40200248  T
Q  123 atttcttccttcaaaaaataagtcattgatttaattc-ttaacccctaaatacacttgttttgaactttgatggaaatgaagaatcaattattttgagaa 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40200247 atttcttccttcaaaaaataagtcattgatttaattctttaacccctaaatacacttgttttgaactttgatggaaatgaagaatcaattattttgagaa 40200148  T
Q  222 agatattcaaaatgctacgtcctcgtataaaaca 255  Q
    ||||||||||||||||||||||||| ||||||||    
T  40200147 agatattcaaaatgctacgtcctcgcataaaaca 40200114  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 36677706 - 36677789
Alignment:
Q  57 agctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa 140  Q
    ||||| ||| |||||||||||| ||||| |||||||||| ||||| |||||||| |||||| ||||||||||||||| ||||||    
T  36677706 agctcgcatgttatagatgatgttccctcatgtatttgacacattttagctaatgaaatgcaataaatttcttccttaaaaaaa 36677789  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 31957015 - 31956940
Alignment:
Q  57 agctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttcct 132  Q
    |||||| |||||||||||||||| |||| |||||||||  ||||| || ||||| |||||| || || ||||||||    
T  31957015 agctcctatattatagatgatgcaccctcatgtatttggcacattttaactaatgaaatgcaatgaaattcttcct 31956940  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 10346500 - 10346423
Alignment:
Q  63 catattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa 140  Q
    ||||||||||||||||  |||| |||||||||| ||||| |||||||| |||||| || |||||||||||| ||||||    
T  10346500 catattatagatgatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttccttaaaaaaa 10346423  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 33315235 - 33315291
Alignment:
Q  57 agctcccatattatagatgatgctcccttatgtatttgaaacattatagctaataaa 113  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| || ||||||||    
T  33315235 agctcccatattatagatgatgctccttcatgtatttgacacattttaactaataaa 33315291  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 17321968 - 17322046
Alignment:
Q  61 cccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaa 139  Q
    |||||||||| |||||||  |||| |||||| ||| ||||| |||||||| || ||| || |||||||||||| |||||    
T  17321968 cccatattattgatgatgtaccctcatgtatgtgacacattttagctaatgaattgcaatgaatttcttccttaaaaaa 17322046  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 9808734 - 9808655
Alignment:
Q  61 cccatattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa 140  Q
    |||||||||||||||||| ||| | |||||||||  ||| | |||||||| |||||| ||||||||||||| | ||||||    
T  9808734 cccatattatagatgatgttccttcatgtatttgtcacactttagctaatgaaatgcaataaatttcttccataaaaaaa 9808655  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 6969713 - 6969784
Alignment:
Q  69 atagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa 140  Q
    |||||||||||||| | |||||||||| ||||| |||||| | |||||| ||  |||||||| |||||||||    
T  6969713 atagatgatgctccttcatgtatttgacacattttagctattgaaatgcaatgtatttcttctttcaaaaaa 6969784  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 1311237 - 1311303
Alignment:
Q  63 catattatagatgatgctcccttatgtatttgaaacattatagctaataaaatgcgataaatttctt 129  Q
    ||||||||||||| ||| || ||||| |||||||||||| || |||||||||||  || ||||||||    
T  1311237 catattatagatggtgcacctttatgcatttgaaacattttacctaataaaatgaaatgaatttctt 1311303  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 6860591 - 6860675
Alignment:
Q  57 agctcccatattatagatgatgctcccttatgt-atttgaaacattatagctaataaaatgcgataaatttcttccttcaaaaaa 140  Q
    |||||| ||||||||||| ||||||| | |||| |||||| ||||| |||||||| |||||| || ||||| ||| || ||||||    
T  6860591 agctcctatattatagataatgctccttcatgtaatttgatacattttagctaatgaaatgcaatgaattttttctttaaaaaaa 6860675  T

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