View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_59 (Length: 267)
Name: NF19748_high_59
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 4129036 - 4129280
Alignment:
| Q |
15 |
aactcaacaaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaat |
114 |
Q |
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| T |
4129036 |
aactcaacaaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaat |
4129135 |
T |
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| Q |
115 |
tcttctattgtttgggaaagtttcaagtttcccactgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagaga |
214 |
Q |
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| T |
4129136 |
tcttctattgtttgggaaagtttcaagtttcccaccgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagaga |
4129235 |
T |
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| Q |
215 |
ccaattacacaagtgggaggttccaactttattttcgtgatgatg |
259 |
Q |
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| T |
4129236 |
ccaactacacaagtgggaggttccaactttattttcgtgatgatg |
4129280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 4105858 - 4106090
Alignment:
| Q |
27 |
tgaatccatttggacagcacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctattgtt |
126 |
Q |
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| T |
4105858 |
tgaatccatttggacagcacaaccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtt |
4105957 |
T |
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| Q |
127 |
tgggaaagtttcaagtttcccactgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaattacacaa |
226 |
Q |
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| T |
4105958 |
tgggaaagttttaagtttcctactgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaa |
4106057 |
T |
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| Q |
227 |
gtgggaggttccaactttattttcgtgatgatg |
259 |
Q |
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| T |
4106058 |
gtggaaggttccaactttattttaatgatgatg |
4106090 |
T |
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