View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_high_6 (Length: 628)

Name: NF19748_high_6
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_high_6
NF19748_high_6
[»] chr4 (1 HSPs)
chr4 (9-610)||(45279893-45280515)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 9 - 610
Target Start/End: Original strand, 45279893 - 45280515
Alignment:
Q  9 agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45279893 agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac 45279992  T
Q  109 tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaa--------------------aacaaaggttaa----ttaacagt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||    ||||||||    
T  45279993 tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaaaacaattcgcattaacataaaacaaaggttaattaattaacagt 45280092  T
Q  185 aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45280093 aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat 45280192  T
Q  285 attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagtcatttatccaaaatagacataactcaga 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |    
T  45280193 attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagccatttatccaaaatagacataactc--a 45280290  T
Q  385 aacaatnnnnnnntttaagagttaaatatggtcttgaacaaatgaaaaagaaataagagactcacagataagtcgttggttatgtgggaaatctcttcct 484  Q
    ||||||       ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  45280291 aacaat-aaaaaatttaagatttaaatatggtcttgaacaaatgaaaaagaagtaagaggctcacagataagtcgttggttatgtgggaaatctcttcct 45280389  T
Q  485 tggctttcttggagatccaaaagcttccaagtttagtcatagctttatccattttccttctcaatattttttgcagaaagaaatgaatataaaaatggtg 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45280390 tggctttcttggagatccaaaagcttccaagtttagtcatagctttatccattttccttctcaatattttttgcagaaagaaatgaatataaaaatggtg 45280489  T
Q  585 ttaaaaacactttagaggcttagagt 610  Q
    ||||||||||||||||||||||||||    
T  45280490 ttaaaaacactttagaggcttagagt 45280515  T

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