View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_high_60 (Length: 266)
Name: NF19748_high_60
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8253372 - 8253625
Alignment:
| Q |
1 |
aacttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacatacttcttgtttcatgtgagacaagttaattatgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8253372 |
aacttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacatacttcttgtttcatgcgagacaagttaattatgatt |
8253471 |
T |
|
| Q |
101 |
ttccttcatactctgaccttttagtagactcagcttataatttctacaaggtagttttattattgtcctacacgggtttgatccttgtaaatatattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
8253472 |
ttccttcatactctgaccttttagtagactcagcttataatttctacaaggtagttttattattatcctacacgggtttgatccttgtaaatatatttga |
8253571 |
T |
|
| Q |
201 |
tttcatttaaaattcctcnnnnnnntttcatcaagctttggcccattaaatatt |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8253572 |
tttcatttaaaattcctcaaaaaaatttcatcaagctttggcccattaaatatt |
8253625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 8243737 - 8243886
Alignment:
| Q |
4 |
ttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacatacttcttgtttcatgtgagacaagttaattatgattttc |
103 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| || ||||||||||||| ||||||||||| |||| ||||| |||| | ||||||| | ||||| |||| |
|
|
| T |
8243737 |
ttcatcttagccaatagtctttttcttgtggtactaggaagcaatgacatttctaacacgtactacttgtctcatctaagacaagcacaatatgactttc |
8243836 |
T |
|
| Q |
104 |
cttcatactctgaccttttagtagactcagcttataatttctacaaggta |
153 |
Q |
| |
|
|| |||||||||||||||| || ||||||||| ||||||||| ||||| |
|
|
| T |
8243837 |
ctacatactctgaccttttggtcaactcagctttaaatttctaccaggta |
8243886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University