View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_62 (Length: 258)
Name: NF19748_high_62
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_62 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 22684112 - 22684341
Alignment:
| Q |
14 |
cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttcctgcgatagtgagtaacat |
113 |
Q |
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| T |
22684112 |
cagaacctgtggtaaatttgaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttccagcgatagtgagtaacat |
22684211 |
T |
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| Q |
114 |
attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctt--tattg |
211 |
Q |
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| T |
22684212 |
attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggctgcaattgcggtcacaattggcgtttaggagatctctaaaacctttatattg |
22684311 |
T |
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| Q |
212 |
cagtcgcaattacagttgtaggctatgatg |
241 |
Q |
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| T |
22684312 |
cagccgcaattacagttgtaggctatgatg |
22684341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 22695722 - 22695824
Alignment:
| Q |
141 |
caaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctt--tattgcagtcgcaattacagttgtaggctatg |
238 |
Q |
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| T |
22695722 |
caaaactttagcaaatgtggctgcaattgcggtcacaactgccgtagaggagatctctaaaacctttatatcgcagccgcaattacagttgtaggctatg |
22695821 |
T |
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| Q |
239 |
atg |
241 |
Q |
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||| |
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| T |
22695822 |
atg |
22695824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 22695522 - 22695596
Alignment:
| Q |
14 |
cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattc-attctctttgtcattataac |
87 |
Q |
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||||||||| |||||||| |||||||||||||| ||||| |||| | ||| || ||| |||||||||||||||| |
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| T |
22695522 |
cagaacctgcagtaaatttgaacaaataaagcatcaattacacaccgaaaaatctattgtctttgtcattataac |
22695596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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