View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_67 (Length: 250)
Name: NF19748_high_67
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36946139 - 36945903
Alignment:
| Q |
1 |
catctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccgcagatgtcctcagtttcaacataactaagtggtgttgcaga |
100 |
Q |
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| T |
36946139 |
catctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccacagatgtcctcagtttcaacataactaagtggtgttgcaga |
36946040 |
T |
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| Q |
101 |
tgcctctagattgcatagttctgacctgtgttcagaaataaagctcgagaaatattatcacacgattgcaaagttacatagctacaagttatctatcgat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36946039 |
tgcctttagattgcatagttctgacctgtgttcagaaataaagctcgagaaatattatcacacgattgcaaagttacatagctacaaattatctatcgat |
36945940 |
T |
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| Q |
201 |
cttaagaaaaatcttccctatctattcatattaagaa |
237 |
Q |
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||||||||||||||||| ||||||||||| ||||||| |
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| T |
36945939 |
cttaagaaaaatcttccttatctattcatcttaagaa |
36945903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17768900 - 17768993
Alignment:
| Q |
1 |
catctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccgcagatgtcctcagtttcaacataactaagtggtgt |
94 |
Q |
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||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || |||| |||||| | |||||||||| |||||| |
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| T |
17768900 |
catctgcaatgtacaattcacctgttttcttgtcgaatctgagtcccaaaggccttccacatatgtgctcagtcttcacataactaaatggtgt |
17768993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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