View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_68 (Length: 249)
Name: NF19748_high_68
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 37841490 - 37841274
Alignment:
| Q |
16 |
atcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37841490 |
atcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatca |
37841391 |
T |
|
| Q |
116 |
tgttcattcattatctcacgtagaaaagatgccgtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841390 |
tgttcattcattatctcacgtagaaaagatgccgtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttcca |
37841291 |
T |
|
| Q |
216 |
acatttcatctccaatt |
232 |
Q |
| |
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||||||||||||||||| |
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| T |
37841290 |
acatttcatctccaatt |
37841274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 38380769 - 38380985
Alignment:
| Q |
16 |
atcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38380769 |
atcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatca |
38380868 |
T |
|
| Q |
116 |
tgttcattcattatctcacgtagaaaagatgccgtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttcca |
215 |
Q |
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||||| |||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||||| | |||||||||| |
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| T |
38380869 |
tgttcgttcacaatctcacgtagaaaagatgctgtttgtgatccattcttagtgaaaacttcttgatacctcacattttcagcatgtttaaattcttcca |
38380968 |
T |
|
| Q |
216 |
acatttcatctccaatt |
232 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
38380969 |
acatttcatcaccaatt |
38380985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 38389635 - 38389851
Alignment:
| Q |
16 |
atcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
38389635 |
atcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaatca |
38389734 |
T |
|
| Q |
116 |
tgttcattcattatctcacgtagaaaagatgccgtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttcca |
215 |
Q |
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|
||||| |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
38389735 |
tgttcgttcacaatctcacgtagaaaagatgctgtttgtgatccattctcagtaaaaacttcttgatacctcacattttcagcatgtttcaattcttcca |
38389834 |
T |
|
| Q |
216 |
acatttcatctccaatt |
232 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
38389835 |
acatttcatcaccaatt |
38389851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 38398398 - 38398614
Alignment:
| Q |
16 |
atcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntca |
115 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
38398398 |
atcaccaatagcaccgagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatca |
38398497 |
T |
|
| Q |
116 |
tgttcattcattatctcacgtagaaaagatgccgtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttcca |
215 |
Q |
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||||| |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
38398498 |
tgttcgttcacaatctcacgtagaaaagatgctgtttgtgatccattctcagtaaaaacttcttgatacctcacattttcagcatttttcaattcttcca |
38398597 |
T |
|
| Q |
216 |
acatttcatctccaatt |
232 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
38398598 |
acatttcatcgccaatt |
38398614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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