View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_high_74 (Length: 236)
Name: NF19748_high_74
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 2335724 - 2335873
Alignment:
| Q |
70 |
aaagagtgatgcaaaagagaaaaatatgtatccttcataaatgatgcttttaaattttttccatgttcacgtaagactttaatgtctaatgtcgtgacat |
169 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||| ||||| ||||||| || |||||| |||| | | |
|
|
| T |
2335724 |
aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaattttt-ccatcttcacactagacttttatatctaatttcgtcaaac |
2335822 |
T |
|
| Q |
170 |
atgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatattggt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2335823 |
atgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatattggt |
2335873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 2319321 - 2319477
Alignment:
| Q |
64 |
gcctgcaaagagtgatgcaaaagagaaaaatatgtatccttcataaatgatgcttttaaattttttccatgttcacgtaagactttaatgtctaatgtcg |
163 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||| |||||||||||||||||| |||||| |||||||||||||| |||||||| || ||||||||| |
|
|
| T |
2319321 |
gccttcaaagaatgatgcaaaggagaaaaacttgtctccttcataaatgatgctattaaatattttccatgttcacacaagacttttatatctaatgtca |
2319420 |
T |
|
| Q |
164 |
tgacatatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatattggt |
220 |
Q |
| |
|
||| | |||||||| || ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2319421 |
tgatacatgtgtagtactatcaatgagtctaatcattcaatcgtaccgaatattggt |
2319477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 2326156 - 2326309
Alignment:
| Q |
69 |
caaagagtgatgcaaaagagaaaaatatgtatccttcataaatgatgcttttaaattttttcc-atgttcacgtaagactttaatgtctaa-tgtcgtga |
166 |
Q |
| |
|
|||||| ||||||| | |||||| | ||||||||||| ||||||||||||||| ||||||| | |||||||| ||||||||| || ||||| |||||||| |
|
|
| T |
2326156 |
caaagaatgatgcataggagaaatacatgtatccttcgtaaatgatgcttttacatttttttctatgttcacataagacttttatttctaaatgtcgtga |
2326255 |
T |
|
| Q |
167 |
catatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatattggt |
220 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
2326256 |
cacatgtgtagcaccatcaattagtctaatcattatatcgtacagaatattggt |
2326309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University