View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_75 (Length: 220)
Name: NF19748_high_75
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_75 |
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Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 18306527 - 18306473
Alignment:
| Q |
45 |
aattgacacacgatgaaaagaaaac-aaagaaaactctttaactccactaagtat |
98 |
Q |
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| T |
18306527 |
aattgacacacgatgaaaagaaaattaaagaaaactctttaactccactaagtat |
18306473 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 5078518 - 5078548
Alignment:
| Q |
15 |
atgaaggaagaaagggtttcggaggaatgaa |
45 |
Q |
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| T |
5078518 |
atgaaggaagaaagggtttcggaggaatgaa |
5078548 |
T |
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