View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_high_78 (Length: 213)
Name: NF19748_high_78
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_high_78 |
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| [»] scaffold0090 (2 HSPs) |
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Alignment Details
Target: scaffold0090 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8672 - 8778
Alignment:
| Q |
1 |
gaagattagtacataatataacttcattcttaaactctttaagtccatgaccagaactccttgaaagccttttgacagcaatttcttgtccatcaagcaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8672 |
gaagtttagtacataatataacttcattcttaaactctttaagtccttgtccagaactccttgaaagccttttgacagcaatttcttgtccatcaagcaa |
8771 |
T |
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| Q |
101 |
tgtaccc |
107 |
Q |
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||||||| |
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| T |
8772 |
tgtaccc |
8778 |
T |
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Target: scaffold0090; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 8836 - 8884
Alignment:
| Q |
165 |
tccgcttgacttgaaatgttgtaagtttaccttgtataccggtccaaaa |
213 |
Q |
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| T |
8836 |
tccgcttgacttgaaatgttgtaagtttaccttgtataccggtccaaaa |
8884 |
T |
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Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13854824 - 13854732
Alignment:
| Q |
1 |
gaagattagtacataatataacttcattcttaaactctttaagtccatgaccagaactccttgaaagccttttgacagcaatttcttgtccat |
93 |
Q |
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|||| ||||||||||||||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13854824 |
gaagtttagtacataatataacttcattttaaaactctttaggtccttgtccagaactccttgaaagccttttgacagcaatttcttgcccat |
13854732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 13854651 - 13854615
Alignment:
| Q |
177 |
gaaatgttgtaagtttaccttgtataccggtccaaaa |
213 |
Q |
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| T |
13854651 |
gaaatgttgtaagtttaccttatatactggtccaaaa |
13854615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 28432842 - 28432741
Alignment:
| Q |
6 |
ttagtacataatataacttcattcttaaactctttaagtccatgaccagaactccttgaaagccttttgacagcaatttcttgtccatcaagcaatgtac |
105 |
Q |
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|||| ||| ||||| |||||||| ||||| ||||| | ||| |||| |||| | | |||||| |||||||| |||| |||||||||||| | ||||||| |
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| T |
28432842 |
ttagcacacaatatgacttcatttttaaattctttcaatccttgacaagaatttcctgaaagtcttttgactgcaacttcttgtccatctaataatgtac |
28432743 |
T |
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| Q |
106 |
cc |
107 |
Q |
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|| |
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|
| T |
28432742 |
cc |
28432741 |
T |
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