View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_10 (Length: 570)
Name: NF19748_low_10
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 148 - 558
Target Start/End: Original strand, 5229561 - 5229970
Alignment:
| Q |
148 |
atataacggttggattagtgtatagtttccactaatgaagctaacacagagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccagc |
247 |
Q |
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| T |
5229561 |
atataacggttggattagtgtatagtttccactaatgaagctaacacaaagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccaca |
5229660 |
T |
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| Q |
248 |
aaagatgttaatttttcaagtcttgtcttaactcttaactaccatcattggcatagtttaatcacaactaatgaaccaaacatatatactatatatgctt |
347 |
Q |
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| T |
5229661 |
aaagatgttaatctttcaagtcttgtcttaactcttaactaccatcattggcatagtttaatcacaaccaatgaaccaaacatatatactatatatgctt |
5229760 |
T |
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| Q |
348 |
taacttcactcctactcnnnnnnnnnnnnnnnnnnnntcattaaaccctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctt |
447 |
Q |
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| T |
5229761 |
taacttcactcctactc-aaaaaataaaaaaataaaatcattaaaccctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctt |
5229859 |
T |
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| Q |
448 |
tcttcacatctttaatcttcttccattcctcatgaacccttcagaaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatc |
547 |
Q |
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| T |
5229860 |
tcttcacatctttaatcttcttccattcctcatgaacccttcagaaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatc |
5229959 |
T |
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| Q |
548 |
tgcattcttct |
558 |
Q |
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| T |
5229960 |
tgcattcttct |
5229970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 5229442 - 5229527
Alignment:
| Q |
18 |
gttatgctttcaaatacaatcacactatcaaattatgtatatcaccaactttcagtcaagtaaacaattcaatcttttcacaacct |
103 |
Q |
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| T |
5229442 |
gttatgctttcaaatacaatcacactatcaaattatgtatctcaccaactttcagtcaagtaaacaattcaatcttttcacaacct |
5229527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 5229514 - 5229549
Alignment:
| Q |
118 |
tcttttcacaacctatttttcttatttattatataa |
153 |
Q |
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| T |
5229514 |
tcttttcacaacctatttttcttatttattatataa |
5229549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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