View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_11 (Length: 530)
Name: NF19748_low_11
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Original strand, 40170881 - 40171387
Alignment:
| Q |
16 |
cacatcatacagtagtagaatgattgaatataattagatgtatgtgtaaaatttatttacaccatcgggatatacaacttaaatcctaattcgtgcatgt |
115 |
Q |
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| T |
40170881 |
cacataataaagtagtagaatgattgaatataattagatgcatttgtaaattttatttacaccattgggatatacaacttaaatcctaattcgtgcatgt |
40170980 |
T |
|
| Q |
116 |
atgtcctaattttatgtactttaataggactgtttttgttacttgaaggttccatgcgtgtccaaaaccgcaaagacaaaaaaggattctgttgcgagtt |
215 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |||| |||| |
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| T |
40170981 |
atgtgcaaattttatgtactttaataggactgtttttgttacttgaaggttccatgtgcgtccaaaactgcaaagacaaagaaggattccattgcaagtt |
40171080 |
T |
|
| Q |
216 |
cacagaaaaatgttatgtccgagaacattttgcaaccctcatcgagagtaaaatcgagtggatttctgctctccaaagaggcatgttcgaccaaagctag |
315 |
Q |
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| T |
40171081 |
cgcagaaaaatgttatgtccgagaacattttgcaaccctcatcgagaataagatcgagtggatttctggtctccaaagaggcatgttcgaccaaagctag |
40171180 |
T |
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| Q |
316 |
tcaaattaagactggagttaaagcattcattgctccaagcaatgatggtgctgtttgtcccgattttaagagtgtggtctgtagtccgagatggatggac |
415 |
Q |
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| T |
40171181 |
tcaaattaagactggagttaaagcattcattgctccaagcaatgatggtgctgtttgtccagattttaagagtgtggtctgtagtccgagatggatggac |
40171280 |
T |
|
| Q |
416 |
atttacccaagtaattccttcagcggttccggttcactggatgagagcatgtcaaccagcgattctctgaggactccggaatttgaatatattcacaatg |
515 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
40171281 |
atttacccaagtaattccttcagcggttctgcttcactggatgagagcatgtcaaccagcgattctctgatgactccagaatttgaatatattcggaatg |
40171380 |
T |
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| Q |
516 |
atgatgt |
522 |
Q |
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| T |
40171381 |
acgatgt |
40171387 |
T |
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