View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_low_12 (Length: 528)

Name: NF19748_low_12
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_low_12
NF19748_low_12
[»] chr4 (3 HSPs)
chr4 (17-456)||(39111784-39112223)
chr4 (454-514)||(39111758-39111818)
chr4 (302-349)||(5826669-5826716)
[»] chr2 (2 HSPs)
chr2 (301-514)||(4567134-4567348)
chr2 (301-354)||(2279305-2279358)
[»] chr3 (8 HSPs)
chr3 (366-514)||(5449143-5449291)
chr3 (302-354)||(22004058-22004110)
chr3 (302-354)||(22011575-22011627)
chr3 (302-350)||(26959979-26960027)
chr3 (302-354)||(27949173-27949225)
chr3 (304-349)||(8474945-8474990)
chr3 (302-354)||(10477855-10477907)
chr3 (302-356)||(27657931-27657985)
[»] chr8 (5 HSPs)
chr8 (366-456)||(41414270-41414360)
chr8 (454-514)||(41414244-41414304)
chr8 (302-354)||(27990153-27990205)
chr8 (302-354)||(28047455-28047507)
chr8 (306-349)||(32242464-32242507)
[»] chr7 (2 HSPs)
chr7 (302-349)||(328172-328219)
chr7 (304-356)||(32839176-32839228)
[»] chr1 (2 HSPs)
chr1 (301-354)||(39156770-39156823)
chr1 (300-349)||(40042455-40042504)
[»] chr5 (2 HSPs)
chr5 (302-352)||(6383750-6383800)
chr5 (306-354)||(40273594-40273642)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 39112223 - 39111784
Alignment:
Q  17 cttagtacctgacactataactcaggatatagccatttacaaaagataaaataaaagattcaactcctatcccacaatctataattcaccatccttcaaa 116  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39112223 cttagtacctaacactataactcaggatacagccatttacaaaagataaaacaaaagattcaactcctatcccacaatctataattcaccatccttcaaa 39112124  T
Q  117 tcatgatacttgggtactgaagcatccaaacatcacccatactataacaaatcaacacaagcaaacaagaatcatataatacactatatgcataatcgac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39112123 tcatgatacttgggtactgaagcatccaaacatcacccatactataacaaatcaacacaagcaaacaagaatcatataatacactatatgcataattgac 39112024  T
Q  217 caataccaaaaagttttctaaagagctttttattttaaaaataagcttggccatacgtaacttaagaatagtgggttggttgcggggcaaaggctacggt 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39112023 caacaccaaaaagttttctaaagagctttttattttaaaaataagcttggccatacgtaacttaagaatagtgggttggttgcggggcaaaggctacggt 39111924  T
Q  317 ggaagacttctttaggtctcctacggtaggagatttgactannnnnnngtgtttggttgctaaataaataggagttattggattaatccaacggtttata 416  Q
    || ||||||||||||||||||||| |||| ||| |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39111923 gggagacttctttaggtctcctaccgtagaagacttgactatttttttttgtttggttgctaaataaataggagttattggattaatccaacggtttatt 39111824  T
Q  417 gataaaaagagaaaagcattgcaattggaggagagagaaa 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39111823 gataaaaagagaaaagcattgcaattggaggagagagaaa 39111784  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 39111818 - 39111758
Alignment:
Q  454 aaagagaatatcattgcaattggatgagagagaaacgtatatgcagatcattttcttccat 514  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39111818 aaagagaaaagcattgcaattggaggagagagaaacgtatatgcagatcattttcttccat 39111758  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 5826669 - 5826716
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggaga 349  Q
    ||||||||||||||| | |||||||||||| |||||||| ||||||||    
T  5826669 ggcaaaggctacggtaggagacttctttagatctcctaccgtaggaga 5826716  T

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Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 301 - 514
Target Start/End: Complemental strand, 4567348 - 4567134
Alignment:
Q  301 gggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttgactannnnnnngt-gtttggttgctaaataaataggagttattggat 399  Q
    |||||||||||||||||| |||| | |||||||||||||| |||||||| |||| ||        | |||||||||||||||||||||||||||||||||    
T  4567348 gggcaaaggctacggtgggagacctttttaggtctcctaccgtaggagacttgattattatttttttgtttggttgctaaataaataggagttattggat 4567249  T
Q  400 taatccaacggtttatagataaaaagagaaaagcattgcaattggaggagagagaaagagaatatcattgcaattggatgagagagaaacgtatatgcag 499  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4567248 taatccaacggtttattgataaaaagagaaaagcattgcaattggaggagagagaaagagaaaagcattgcaattggatgagagagaaacgtatatgcag 4567149  T
Q  500 atcattttcttccat 514  Q
    |||||||||||||||    
T  4567148 atcattttcttccat 4567134  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 2279305 - 2279358
Alignment:
Q  301 gggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    |||||||||||||||||| |||| |||||||||||||||| ||| |||| ||||    
T  2279305 gggcaaaggctacggtgggagacctctttaggtctcctaccgtatgagacttga 2279358  T

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Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 366 - 514
Target Start/End: Original strand, 5449143 - 5449291
Alignment:
Q  366 tgtttggttgctaaataaataggagttattggattaatccaacggtttatagataaaaagagaaaagcattgcaattggaggagagagaaagagaatatc 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |    
T  5449143 tgtttggttgctaaataaataggagttattggattaatccaacggtttattgataaaaagagaaaaacattgcaattggaggagagagaaagagaaaagc 5449242  T
Q  466 attgcaattggatgagagagaaacgtatatgcagatcattttcttccat 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5449243 attgcaattggatgagagagaaacgtatatgcagatcattttcttccat 5449291  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 22004110 - 22004058
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||| ||||    
T  22004110 ggcaaaggctacggtgggagacctctttaggtctcctaccgtaggagacttga 22004058  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 22011627 - 22011575
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||| ||||    
T  22011627 ggcaaaggctacggtgggagacctctttaggtctcctaccgtaggagacttga 22011575  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 26960027 - 26959979
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagat 350  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  26960027 ggcaaaggctacggtgggagacctctttaggtctcctaccgtaggagat 26959979  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 27949225 - 27949173
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||| ||||    
T  27949225 ggcaaaggctacggtgggagacctctttaggtctcctaccgtaggagacttga 27949173  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 8474990 - 8474945
Alignment:
Q  304 caaaggctacggtggaagacttctttaggtctcctacggtaggaga 349  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||    
T  8474990 caaaggctacggtggaagacctttttaggtctcctaccgtaggaga 8474945  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 10477855 - 10477907
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    |||||||| ||||||||||||  |||||||||||||||| || ||||||||||    
T  10477855 ggcaaaggttacggtggaagatctctttaggtctcctactgtgggagatttga 10477907  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 27657985 - 27657931
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttgact 356  Q
    |||||| |||||||| | |||| |||||||||||||||| |||||||| ||||||    
T  27657985 ggcaaacgctacggtaggagacctctttaggtctcctaccgtaggagacttgact 27657931  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 366 - 456
Target Start/End: Complemental strand, 41414360 - 41414270
Alignment:
Q  366 tgtttggttgctaaataaataggagttattggattaatccaacggtttatagataaaaagagaaaagcattgcaattggaggagagagaaa 456  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  41414360 tgtttggttgctaaataaataggagttattggattaattcaacggtttattgataaaaagagaaaagcattgcaattgaatgagagagaaa 41414270  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 41414304 - 41414244
Alignment:
Q  454 aaagagaatatcattgcaattggatgagagagaaacgtatatgcagatcattttcttccat 514  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41414304 aaagagaaaagcattgcaattgaatgagagagaaacgtatatgcagatcattttcttccat 41414244  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 27990205 - 27990153
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||||| ||||    
T  27990205 ggcaaaggctacggtgggagacctcgttaggtctcctaccgtaggagacttga 27990153  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 28047507 - 28047455
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||||| ||||    
T  28047507 ggcaaaggctacggtgggagacctcgttaggtctcctaccgtaggagacttga 28047455  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 32242464 - 32242507
Alignment:
Q  306 aaggctacggtggaagacttctttaggtctcctacggtaggaga 349  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  32242464 aaggctacggtgggagacctctttaggtctcctaccgtaggaga 32242507  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 328172 - 328219
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggaga 349  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  328172 ggcaaaggctacggtgggagacctctttaggtctcctaccgtaggaga 328219  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 32839228 - 32839176
Alignment:
Q  304 caaaggctacggtggaagacttctttaggtctcctacggtaggagatttgact 356  Q
    ||||||||||||||| |||| ||||||| |||||||| |||||||| ||||||    
T  32839228 caaaggctacggtgggagacctctttagatctcctaccgtaggagacttgact 32839176  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 39156770 - 39156823
Alignment:
Q  301 gggcaaaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    ||||||||||||| |||| |||| |||||||||||||||| |||||||| ||||    
T  39156770 gggcaaaggctacagtgggagacctctttaggtctcctaccgtaggagacttga 39156823  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 40042455 - 40042504
Alignment:
Q  300 ggggcaaaggctacggtggaagacttctttaggtctcctacggtaggaga 349  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  40042455 ggggcaaaggctacggtgggagacctctttaggtctcctaccgtaagaga 40042504  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 6383800 - 6383750
Alignment:
Q  302 ggcaaaggctacggtggaagacttctttaggtctcctacggtaggagattt 352  Q
    ||||||||||||||| | || | |||||||||||||||| |||||||||||    
T  6383800 ggcaaaggctacggtaggaggcctctttaggtctcctaccgtaggagattt 6383750  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 40273642 - 40273594
Alignment:
Q  306 aaggctacggtggaagacttctttaggtctcctacggtaggagatttga 354  Q
    |||||||||||||||||  ||||||| ||| ||||||||||||| ||||    
T  40273642 aaggctacggtggaagatctctttagatcttctacggtaggagacttga 40273594  T

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