View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_15 (Length: 518)
Name: NF19748_low_15
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 21307147 - 21307634
Alignment:
| Q |
18 |
aattgcaccatctccattaaatccaaatttttcagctgcttgttccaatagactcacaaatattggatttgttaaacaactcaatggcacaataaatctc |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21307147 |
aattgcaccatctccattaaatccatatttttcagctgcttcttccaatagactcacaaatattggatttgttaaacaactcaatggcacaataaatctc |
21307246 |
T |
|
| Q |
118 |
tttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttattatcctttcttcccatta |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
21307247 |
tttgcttc------atcttcatccttagcaatcacaacaaaatgtccttttttcacatcctttgcctcataccttgatttattatcctttcttcccaata |
21307340 |
T |
|
| Q |
218 |
atagggttttttggagctttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgattacaagttgtttttaagatgtatatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
21307341 |
atagggttttttggagctttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgatttctagttgtttttaagatgtatatgt |
21307440 |
T |
|
| Q |
318 |
gtacaagatagatttgttttatgatg-tttcattaatttaatatgcttaatatttatagtgttcttgttaacaaagacacaaataatttggccccatatc |
416 |
Q |
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| T |
21307441 |
gttcaagatagatttgttttatgatgatttgatgaatttaatatgcttaatatttatagtgttcttgttaacaaagacacaaataatttggccccatatc |
21307540 |
T |
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| Q |
417 |
aagttagaacataccgaacataagtgaaagcgaaatatagcaattcatgtatgtgatcggtgcactgttttcgaacgaacattttatattcttg |
510 |
Q |
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| T |
21307541 |
aagttagaacataccgaacataagtgaaagcgaaatatagcaattcatgtatgtgatcggtgcactgttttcgaacgaacattttattttcttg |
21307634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Original strand, 21297725 - 21298145
Alignment:
| Q |
21 |
tgcaccatctccattaaatccaaatttttcagctgcttgttccaatagactcacaaatattggatttgttaaacaactcaatggcacaataaatctcttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21297725 |
tgcaccatctccattaaatccaaatttttcagctgcttgttccaatagactcacaaatattggatttgctaaacaactcaatggcacaataaatctcttt |
21297824 |
T |
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| Q |
121 |
gcttcatcttcatcttcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttattatcctttcttcccattaata |
220 |
Q |
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| T |
21297825 |
gcttcatcttcatcttcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttataatcatttcttcccattaata |
21297924 |
T |
|
| Q |
221 |
gggttttttggagctttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgattacaagttgtttttaagatgtatatgtgta |
320 |
Q |
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| T |
21297925 |
gggttttgtggagcttaatgaagacattattcttgagcttcaaaattccacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgtt |
21298024 |
T |
|
| Q |
321 |
caagatagatttgttttatgatg-tttcattaatttaatatgcttaatatttatagtgttcttgttaacaaagacacaaataattt-ggccccatatcaa |
418 |
Q |
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||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||| ||| ||||||||||||| ||| |||| ||| | |||| || |
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| T |
21298025 |
caagatagatttgttttatgatgatttgatcaatttaatatgctttatatttatagtgtgcttcttaacaaagacactaattatttgggcactatataaa |
21298124 |
T |
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| Q |
419 |
gttagaacataccgaacataa |
439 |
Q |
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||||||| ||||||||||||| |
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| T |
21298125 |
gttagaatataccgaacataa |
21298145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 21298171 - 21298222
Alignment:
| Q |
450 |
aatatagcaattcatgtatgtgatcggtgcactgttttcgaacgaacatttt |
501 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||| || ||||| |
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| T |
21298171 |
aatatagcaattcatgtatgtgttcggtacagtgttttcgaaccaatatttt |
21298222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 40770121 - 40770019
Alignment:
| Q |
64 |
aatagactcacaaatattggatttgttaaacaactcaatggcacaataaatctctttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtc |
163 |
Q |
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||||| ||||||||| ||||||| ||||||||||| ||||| | | ||||||||||||||| ||||| | | |||||||||||||| ||||||||| |
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| T |
40770121 |
aatagcctcacaaatgttggattagttaaacaacttaatggtaacacaaatctctttgcttcttcttccttcctacccttagcaatcacagcaaaatgtc |
40770022 |
T |
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| Q |
164 |
ctt |
166 |
Q |
| |
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||| |
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| T |
40770021 |
ctt |
40770019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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