View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_16 (Length: 517)
Name: NF19748_low_16
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 181 - 505
Target Start/End: Original strand, 2332167 - 2332489
Alignment:
| Q |
181 |
ttatatacgcaggccatcatcagaagacgacgaaataaaatttctggtttgaatgtggaaaacatatggtgcacgaatgcaagcactctcaaaagggaag |
280 |
Q |
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| T |
2332167 |
ttatacacgcaggccatcatcagaagacggcgaaataaaatttctggtttgaatgtggaaaacat--ggtgcacgaatgcaagcactctcaaaagggaag |
2332264 |
T |
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| Q |
281 |
cctcaaagttttttatgaatctattccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttagcattaacttga |
380 |
Q |
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| T |
2332265 |
cctcaaagttttttatgcatctatcccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttggcattagcttga |
2332364 |
T |
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| Q |
381 |
tggaccagcttctcttgcctgtaactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgat |
480 |
Q |
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| T |
2332365 |
tggaccagcttctcttgcctgtcactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgat |
2332464 |
T |
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| Q |
481 |
attttacaaaatttgttggcatatt |
505 |
Q |
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| T |
2332465 |
attttacaaaatttgttggcatatt |
2332489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 2332019 - 2332085
Alignment:
| Q |
32 |
ttcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
98 |
Q |
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| T |
2332019 |
ttcaaatagaaacgattgtggggagacaaggatcaaaacgttttatatgtgcaaaagccataagcaa |
2332085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 505
Target Start/End: Complemental strand, 1261909 - 1261823
Alignment:
| Q |
419 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatatt |
505 |
Q |
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|||||| |||||||| | ||||||||||||||||||| || | ||||| |||||||| || |||| ||||| || |||||||||| |
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| T |
1261909 |
aaagatgctattttctcaatgcactcttacaaagccccgggtccagatggttttcaacctatttttttcaaaacttattggcatatt |
1261823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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