View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_17 (Length: 501)
Name: NF19748_low_17
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 55915 - 55448
Alignment:
| Q |
18 |
catctcgcactcatagccacattttccattttcgtttcttaggagcgtaatctatgcattttgtttacggttcgtttataagttttggattttctgattc |
117 |
Q |
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| T |
55915 |
catctcgcactcatagcaacattttccattttcgtttcttaggagcgtaatctatgcattttgtttatggttcgtttataagttttggattttctgattc |
55816 |
T |
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| Q |
118 |
tgtttttgtatatatcttgattagcaatgtgttgttgaatctattattaattgtgattaaatttgcaattgtttgatatatattagtccttgtacaaaac |
217 |
Q |
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| T |
55815 |
tgtttttgtatatatcttgattagcaatgtgttgttgaatctattattcattgtgattaaatttgcaattgtttgatatatattagtccttgtacaaaac |
55716 |
T |
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| Q |
218 |
ttgtttgatgaattttctggattatttgtttttgcgaatacaaatttacacagatatcggacacaataccaacacagacatatagacactgatagtaata |
317 |
Q |
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| T |
55715 |
ttgtttgatgaatttcctggatgatttgtttttgcaaatacaaatttacacagatattggacacaataccaacacagacatatagacaccgatagtaata |
55616 |
T |
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| Q |
318 |
taaaataaggtgattgtatgtaatcataagtctcaacgtttgacattgagacatgtgagtgtcagacattggcatgtgtctgacacctgaacacaccttc |
417 |
Q |
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| T |
55615 |
aaaaataaagtgattgtatgtaatcataagtgtcaacgtttgacactgagacatgtgagtgtcagacattggcatgtgtctgacacctgaacacaccttt |
55516 |
T |
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| Q |
418 |
aatttgaagtgtcggtattactttccaaatcatttctaggtttaaatatttattgttgtcattatttt |
485 |
Q |
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| T |
55515 |
aatttgaagtgtcggtattactttccaaatcatttctaggtttaaatatttattgttgtcattatttt |
55448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 433
Target Start/End: Complemental strand, 22882589 - 22882560
Alignment:
| Q |
404 |
ctgaacacaccttcaatttgaagtgtcggt |
433 |
Q |
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| T |
22882589 |
ctgaacacaccttcaatttgaagtgtcggt |
22882560 |
T |
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