View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_18 (Length: 482)
Name: NF19748_low_18
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 2603537 - 2603220
Alignment:
| Q |
18 |
atagttgactttatattcacggatattggcattgggaaagaatcgaccttgagagcagcacactccaaagtcacaaatcaacaaaccagccctacccggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2603537 |
atagttgactttatattcacggatattggcattggggaagaatcgaccttgagagcagtacactccaaagtcacaaatcaacaaaccagccctacccggc |
2603438 |
T |
|
| Q |
118 |
caatctttaaaaaattatttgattatttgataatcttcttatcttttaaactgtgtttgtattctttattcgataattacttgtattctttattcaacct |
217 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2603437 |
caatctctaaaaaattatttgattatttgattttcttcttatcttttaaactgtgtttgtattctttattcgataattacttgtattctttattcaacct |
2603338 |
T |
|
| Q |
218 |
gcaaacagtcacaaataataactagctcatctttcaactatttattttaattttaggtctccatatatcatattcgtcaaatattcaagcatgtgcgact |
317 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2603337 |
gcaaacagtgacaaataataactattgcatctttcaactatttactttacttttaggtctccatatatcatattcgtcaaatattcaaatatgtgtgact |
2603238 |
T |
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| Q |
318 |
atttcctagcatcaaata |
335 |
Q |
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|||||||||||||||||| |
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| T |
2603237 |
atttcctagcatcaaata |
2603220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 482
Target Start/End: Complemental strand, 2603191 - 2603072
Alignment:
| Q |
363 |
accaatgctgcaaatataacttggtgatgtgtatttgtctaggttatgatttccttcaattttatgacccttcaatttgcagaatatattgctagggcag |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2603191 |
accaatgctgcaaatataacttggtgatgtgtatttgtctaggttatgatttccttcaattttatgacccttcaatttgctgaatatattgctagggcag |
2603092 |
T |
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| Q |
463 |
ctcattctttaaaaaagaat |
482 |
Q |
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||||||||||||||||||| |
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| T |
2603091 |
ttcattctttaaaaaagaat |
2603072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 363 - 481
Target Start/End: Complemental strand, 2616708 - 2616590
Alignment:
| Q |
363 |
accaatgctgcaaatataacttggtgatgtgtatttgtctaggttatgatttccttcaattttatgacccttcaatttgcagaatatattgctagggcag |
462 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
2616708 |
accaatgctgcaaatattatttggtgatgtgtatttgtctaggttatgatttccttcaattttatgacccttcaatttgctgaatatagtgctagggcag |
2616609 |
T |
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| Q |
463 |
ctcattctttaaaaaagaa |
481 |
Q |
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|||||||||| ||| |||| |
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| T |
2616608 |
ctcattctttcaaatagaa |
2616590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 2616857 - 2616736
Alignment:
| Q |
214 |
acctgcaaacagtcacaaataataactagctcatctttcaactatttattttaattttaggtctccatatatcatattcgtcaaatattcaagcatgtgc |
313 |
Q |
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|||| |||||||||| |||||||||| ||| ||| |||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||| | ||||| |
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| T |
2616857 |
acctacaaacagtcagaaataataacaagcgcatgtttcaactatttattttactttcaggtctccatatatcatatacgtttaatattcatgtatgtgt |
2616758 |
T |
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| Q |
314 |
gactatttcctagcatcaaata |
335 |
Q |
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||||| |||||||||||||||| |
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| T |
2616757 |
gactacttcctagcatcaaata |
2616736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 2616958 - 2616895
Alignment:
| Q |
126 |
aaaaaattatttgattatttgataatcttcttatcttttaaac--tgtgtttgtattctttatt |
187 |
Q |
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|||||| || |||||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
2616958 |
aaaaaactaattgattatttgatagtcttcttatcttttaaactttgtgtttcgattctttatt |
2616895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 22192503 - 22192588
Alignment:
| Q |
249 |
tttcaactatttattttaattttaggtctccatatatcatattcgtcaaatattcaagcatgtgcgactatttcctagcatcaaata |
335 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
22192503 |
tttcaactatttattttacttttgggtctgcatatatcatatttgtcaaatattcaagcatgtgtgactactt-ctagcatcaaata |
22192588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 22192625 - 22192689
Alignment:
| Q |
371 |
tgcaaatataacttggtgatgtgtatttgtctaggttatgatttccttcaattttatgacccttc |
435 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
22192625 |
tgcaaatataatttggtgatgtgtatttgtctaggttatgattcccttcaattttatgacgcttc |
22192689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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