View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_19 (Length: 465)
Name: NF19748_low_19
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 47491331 - 47491776
Alignment:
| Q |
9 |
gaataatatggagattagatgctactatcattcaaggaaaaaattattgctcatccaagaannnnnnncacttactgaatgatgtaacacatgtgaagaa |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47491331 |
gaataaaatggagattagatgctactatcattcaaggaaaaaattattgctcatccaagaatttttttcacttactgaatgatgtaacacatgtgaagaa |
47491430 |
T |
|
| Q |
109 |
actttcaaatttttgtttagtattaagagatttactctgtgttagtcagcttcaaagttttcaaagttaaaaagacatactagagatgccttataatgaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47491431 |
actttcaaatttttgtttagtattaagagatttactctgtgttagttagcttcaaagttttcaaagttaaaaagacatactagagatgccttataatgaa |
47491530 |
T |
|
| Q |
209 |
taacaaggtgtttgataggtccacatgatgatgctggaactgtcttttgcaactactcaatgcttcgatggtttttcaagctgatgatcagattttaatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47491531 |
taacaaggtgtttgataggtccacatgatgatgctggaactgtcttttgcaactactcaatgcttcgatggtttttcaagctgatgatcagattttaatg |
47491630 |
T |
|
| Q |
309 |
ttagaaattttc-----tttgaagtgtatagacaataatgcttataatcctcttggaattatgctttgaatgcgtgtttcctttaacgtaaaaaactata |
403 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47491631 |
ttagaaattttctttaatttgaagtggatagacaataatgcttataatcctcttggaattatgctttgaatgcgtgtttcctttaacgtcaaaaactata |
47491730 |
T |
|
| Q |
404 |
tataacattatttgacaatggcttaaaattatgttgtgattaacat |
449 |
Q |
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| T |
47491731 |
tataacattatttgacaatggcttaaaattatgttgtaattaacat |
47491776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 33804153 - 33804596
Alignment:
| Q |
9 |
gaataatatggagattagatgctactatcattcaaggaaaaaattattgctcatccaagaannnnnnncacttactgaatgatgtaacacatgtgaagaa |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33804153 |
gaataaaatggagattagatgctactatcattcaag-aaaaaattattgctcatccaagaatttttttcacttactgaatgatgtaacacatgtgaagaa |
33804251 |
T |
|
| Q |
109 |
actttcaaatttttgtttagtattaagagatttactctgtgttagtcagcttcaaagttttcaaagttaaaaagacatactagagatgccttataatgaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33804252 |
actttcaaatttttgtttagtattaagagatttactctgtgttagttagcttccaagttttcaaagttaaaaagacatactagagatgccttataatgaa |
33804351 |
T |
|
| Q |
209 |
taacaaggtgtttgataggtccacatgatgatgctggaactgtcttttgcaactactcaatgcttcgatggtttttcaagctgatgatcagattttaatg |
308 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33804352 |
taacaaggtg-ttgataggtccacatgatgatgccggaactgtcttttgcaactactcaatgcttcgatggtttttcaagctgatgatcagattttaatg |
33804450 |
T |
|
| Q |
309 |
ttagaaattttc-----tttgaagtgtatagacaataatgcttataatcctcttggaattatgctttgaatgcgtgtttcctttaacgtaaaaaactata |
403 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33804451 |
ttagaaattttctttaatttgaagtggatagacaataatgcttataatcctcttggaattatgctttgaatgcgtgtttcctttaacgtcaaaaactata |
33804550 |
T |
|
| Q |
404 |
tataacattatttgacaatggcttaaaattatgttgtgattaacat |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33804551 |
tataacattatttgacaatggcttaaaattatgttgtaattaacat |
33804596 |
T |
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