View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_low_2 (Length: 883)
Name: NF19748_low_2
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_2 |
 | |
|
| [»] scaffold0014 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Original strand, 8961434 - 8962002
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8961434 |
cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
8961533 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgttt-aatagaagga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
8961534 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataatatgccaaatgttttaatagaagga |
8961633 |
T |
|
| Q |
210 |
attattagggaagaaaatatagttattttgtttcaattattaaaaaaaa-tgaacgattgtnnnnnnnnnnnnnnnnnngtgaacgaaatcgagtcaaga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||| |
|
|
| T |
8961634 |
attattagggaagaaaatatagttattttgtttcaattattaaaaaaaaattaacgattgtaaaaaaaaaaa-------gtgaacgaaatcgaggtaaga |
8961726 |
T |
|
| Q |
309 |
aatttaataaattatgatagnnnnnnnntttaaattaattannnnnnnnnnnnnnnnnnccagttaattagtttaaaaatggaagaaattataagaaata |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8961727 |
aatttaataaattatgatag-aaaaaaatttaaattaattatttttttaggattttttttcagttaattagtttaaaaatggaagaaattataagaaata |
8961825 |
T |
|
| Q |
409 |
aaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaaggaattcattcactttacccaaataatgaattttgaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8961826 |
aaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaaggaattcatttactttacccaaataatgaattttgaa |
8961925 |
T |
|
| Q |
509 |
aatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttcaaatgctttatccaaacacactct |
594 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8961926 |
aatgaaaggaattcaa---------ttgaattccttaaaatttcaaattcccttgaattttcaaatgctctatccaaacacactct |
8962002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 3299279 - 3299527
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299279 |
cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattatttttattaaaaaagttttttgtttcaatatttttctatt |
3299378 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaa |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3299379 |
cttacaagtcacgttttaaagaataatccaaattcattttcatttcacatgattttgctaataattgatgtattatataccaaatgtttaatagaaggaa |
3299478 |
T |
|
| Q |
211 |
ttattagggaagaaaatatagttattttgtttcaattattaaaaaaaat |
259 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299479 |
ttattatggaagaaaatatagttattttgtttcaattattaaaaaaaat |
3299527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 369 - 599
Target Start/End: Original strand, 3299630 - 3299860
Alignment:
| Q |
369 |
cagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299630 |
cagttaattagtttaaaaatggaagaaattataaaaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat |
3299729 |
T |
|
| Q |
469 |
gaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattt |
568 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3299730 |
gaaggaattcattcactttacctaaacaatgaatttagaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaattcccttaaattt |
3299829 |
T |
|
| Q |
569 |
tcaaatgctttatccaaacacactctaagga |
599 |
Q |
| |
|
| ||||||| |||||||||||||||| |||| |
|
|
| T |
3299830 |
ttaaatgctctatccaaacacactcttagga |
3299860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 3299549 - 3299589
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3299549 |
gtgaacgaaatcgagtcaaaatatttaataaattatgatag |
3299589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Complemental strand, 9404360 - 9403781
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9404360 |
cgaagaatattagacacatggattatgtgta--cttacaactcttataatacaaatattagttttattgaaaaagttttttgtttcaatatttttctatt |
9404263 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaa |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9404262 |
cttacaagtcacgttttaaagaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgccaaatgtttaatagaaggaa |
9404163 |
T |
|
| Q |
211 |
ttattagggaagaaaat-atagttattttgtttcaattattaaaaaaaatgaacgattgtnnnnnnnnnnnnnnnnnngtgaacgaaatcgagtcaagaa |
309 |
Q |
| |
|
|| | | | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9404162 |
ttgctgctgttggtgtttatagttattttgtttcaattattaaaaaaaatgaacgattgtaaaaaaaaaaaaa-----gtgaacgaaatcgagtcaagaa |
9404068 |
T |
|
| Q |
310 |
atttaataaattatgatagnnnnnnnntttaaattaattannnnnnnnnnnnnnnnnn--ccagttaattagtttaaaaatggaagaaattataagaaat |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9404067 |
atttaataaattatgatagaaaaaaaatttaaattaattatttttttaggattattttttccagttaattagtttaaaaatcgaagaaattataagaaat |
9403968 |
T |
|
| Q |
408 |
aaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaaggaattcattcactttacccaaataatgaattttga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9403967 |
aaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaaggaattcattcactttacccaaacaatgaattttga |
9403868 |
T |
|
| Q |
508 |
aaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttcaaatgctttatccaaacacactct |
594 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9403867 |
aaatgaaatgaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttcaaatgctctatccaaacacactct |
9403781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 11 - 592
Target Start/End: Original strand, 20358986 - 20359541
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaa-aaagttttttgtttcaatatttttctat |
109 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
20358986 |
cgaagaatattagacacatgggttatatgtgaacttacaacttttataatacaaatattagttttattaaagaaagtttttt------------------ |
20359067 |
T |
|
| Q |
110 |
tcttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaagga |
209 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20359068 |
-cttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgtttaatagaagga |
20359166 |
T |
|
| Q |
210 |
attattagggaagaaaatatagttattttgtttcaattatta-aaaaaaatgaacgattgtnnnnnnnnnnnnnnnnnngtgaacgaaatcgagtcaaga |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20359167 |
atcattagggaagaaaatatagttattttgtttcaattattttaaaaaaatgaacgattgtaaaaaaaaaaa-------gtgaacgaaatcgagtcaaga |
20359259 |
T |
|
| Q |
309 |
aatttaataaattatgatagnnnnnnnntttaaattaattannnnnnnnnnnnnnnnnnccagttaattagtttaaaaatggaagaaattataagaaata |
408 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20359260 |
aatttaataaattatgatagaaaaaaa--ttaaattaattattttttaggattttttttccagttaattagtttaaaaatggaagaaattataagaaata |
20359357 |
T |
|
| Q |
409 |
aaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaaggaattcattcactttacccaaataatgaattttgaa |
508 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
20359358 |
aaatttagacaaataaaggaattcaattactttgtcctccaaacaatgaattttgaaaatgaaggaattcattcactttatccaaacaaagaattttgaa |
20359457 |
T |
|
| Q |
509 |
aatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttcaaatgctttatccaaacacact |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
20359458 |
aatgaaaggaattcaattgaagcatttgaattccttagaattttaaatccccttgaattttcaaatgctctatccaaacacact |
20359541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 1993926 - 1994186
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1993926 |
cgaagaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaaggttttttgtttcaatatttttctatt |
1994025 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaa |
210 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
1994026 |
cttacaggtcaagttttagagaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgccagatgtttaatagaaggaa |
1994125 |
T |
|
| Q |
211 |
ttattagggaagaaaatatagttattttgtttcaattatt--aaaaaaaatgaacgattgt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1994126 |
ttattagggaagaaaatatagttattttgtttcaattattaaaaaaaaaatgaacgattgt |
1994186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 368 - 594
Target Start/End: Original strand, 1994277 - 1994503
Alignment:
| Q |
368 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1994277 |
ccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
1994376 |
T |
|
| Q |
468 |
tgaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1994377 |
tgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaattcccttgaatt |
1994476 |
T |
|
| Q |
568 |
ttcaaatgctttatccaaacacactct |
594 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
1994477 |
ttcaaatgctctatccaaacacactct |
1994503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 56559271 - 56559014
Alignment:
| Q |
14 |
agaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctattctt |
113 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
56559271 |
agaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaaggttttttgtttcaatatttttctattctt |
56559172 |
T |
|
| Q |
114 |
acaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaatta |
213 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
56559171 |
acatgtcatgttttagataataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgccagatgtttaatagaaggaatta |
56559072 |
T |
|
| Q |
214 |
ttagggaagaaaatatagttattttgtttcaattattaaaa--aaaatgaacgattgt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56559071 |
ttagggaagaaaatatagttattttgtttcaattattaaaaaaaaaatgaacgattgt |
56559014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 368 - 596
Target Start/End: Complemental strand, 56558921 - 56558693
Alignment:
| Q |
368 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56558921 |
ccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
56558822 |
T |
|
| Q |
468 |
tgaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
56558821 |
tgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaatgaattcaattgaagcatttgaattccttttaatttcaaattcccttgaatt |
56558722 |
T |
|
| Q |
568 |
ttcaaatgctttatccaaacacactctaa |
596 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
56558721 |
ttcaaatgctctatccaaacacactctaa |
56558693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 371 - 597
Target Start/End: Complemental strand, 30454366 - 30454140
Alignment:
| Q |
371 |
gttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatga |
470 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
30454366 |
gttaattagttttaaaatggaagtaattataagaaataaaattaaattaaagaaaggaattcaattactttgtcatctaaacaatgattttgaaaaatga |
30454267 |
T |
|
| Q |
471 |
aggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttc |
570 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
30454266 |
aggaattcattcactttatccaaacaatgaattttgaaaatgaacgaaattcaattgaagcatttgaatttcttaggatttcaaattctcttgaattttc |
30454167 |
T |
|
| Q |
571 |
aaatgctttatccaaacacactctaag |
597 |
Q |
| |
|
|||| || ||||||||||||||||||| |
|
|
| T |
30454166 |
aaatcctctatccaaacacactctaag |
30454140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 476 - 594
Target Start/End: Complemental strand, 24808001 - 24807883
Alignment:
| Q |
476 |
ttcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttcaaatg |
575 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
24808001 |
ttcattcactttatccaaacaatgaattttaaaaattaagggaattcaattgaagcatttgaaatccttagaatttcaaattctcttggattttcaaatc |
24807902 |
T |
|
| Q |
576 |
ctttatccaaacacactct |
594 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
24807901 |
ctccatccaaacacactct |
24807883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 1994197 - 1994237
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1994197 |
gtgaatgaaatcgagtcaagaaatttaataaattatgatag |
1994237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 56559003 - 56558963
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
56559003 |
gtgaatgaaatcgagtcaagaaatttaataaattatgatag |
56558963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 698
Target Start/End: Complemental strand, 26698189 - 26698146
Alignment:
| Q |
655 |
aaagatgattaagccaccacaaatgataattaaaagcaaaatta |
698 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26698189 |
aaagaggattaagccaccacatgtgataattaaaagcaaaatta |
26698146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 698
Target Start/End: Original strand, 53146985 - 53147028
Alignment:
| Q |
655 |
aaagatgattaagccaccacaaatgataattaaaagcaaaatta |
698 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
53146985 |
aaagaggattaagccaccacatatggtaattaaaagcaaaatta |
53147028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 1572167 - 1572216
Alignment:
| Q |
648 |
aaacaagaaagatgattaagccaccacaaatgataattaaaagcaaaatt |
697 |
Q |
| |
|
|||||||| |||||||||| |||||| | |||||| |||||||||||||| |
|
|
| T |
1572167 |
aaacaagagagatgattaaaccaccatatatgatagttaaaagcaaaatt |
1572216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 23636666 - 23636629
Alignment:
| Q |
661 |
gattaagccaccacaaatgataattaaaagcaaaatta |
698 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
23636666 |
gattaagccaccacatatgatagttaaaagcaaaatta |
23636629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 368 - 594
Target Start/End: Original strand, 44614666 - 44614892
Alignment:
| Q |
368 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614666 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
44614765 |
T |
|
| Q |
468 |
tgaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44614766 |
tgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttggatt |
44614865 |
T |
|
| Q |
568 |
ttcaaatgctttatccaaacacactct |
594 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
44614866 |
ttcaaatgctctatccaaacacactct |
44614892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 44614313 - 44614557
Alignment:
| Q |
14 |
agaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctattctt |
113 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44614313 |
agaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaaggttttttgtttcaatatttttctattctt |
44614412 |
T |
|
| Q |
114 |
acaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaatta |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44614413 |
acaagtcacgttttagaaaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgccagatgtttaatagaaggaatta |
44614512 |
T |
|
| Q |
214 |
ttagggaagaaaatatagttattttgtttcaattattaaaaaaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614513 |
ttagggaagaaaatatagttattttgtttcaattattaaaaaaaa |
44614557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 44614584 - 44614624
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614584 |
gtgaatgaaatcgagtcaagaaatttaataaattatgatag |
44614624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 36624896 - 36624855
Alignment:
| Q |
509 |
aatgaaaggaattcaattgaagcatttgaattccttagaatt |
550 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
36624896 |
aatgaaagcaattgaattgaatcatttgaattccttagaatt |
36624855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 368 - 597
Target Start/End: Original strand, 18789308 - 18789538
Alignment:
| Q |
368 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaa-tttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaa |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18789308 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaa |
18789407 |
T |
|
| Q |
467 |
atgaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaat |
566 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18789408 |
atgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttaaattccttagaatttcaaattcccttgaat |
18789507 |
T |
|
| Q |
567 |
tttcaaatgctttatccaaacacactctaag |
597 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
18789508 |
tttcaaatgctctatccaaacacactctaag |
18789538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 22249057 - 22249304
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22249057 |
cgaagaatattagacacatggattatatgtgtacttgcaactcttataatacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
22249156 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaa |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| | |||||| |||| ||||||||||||||||||||| |
|
|
| T |
22249157 |
cttacaagtcacgttttaaagaataatccaaattcattttcattttacgtgattttgctaatagttgatgtaatatataccaaatgtttaatagaaggaa |
22249256 |
T |
|
| Q |
211 |
ttattagggaagaaaatatagttattttgtttcaattattaaaaaaaa |
258 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22249257 |
ttattaggaaagaaaatatagttattttgtttcaattattaaaaaaaa |
22249304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 368 - 540
Target Start/End: Original strand, 22249408 - 22249580
Alignment:
| Q |
368 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
22249408 |
ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaatgaattcaattactttctcatctaaacaatgaattttgaaaa |
22249507 |
T |
|
| Q |
468 |
tgaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaatt |
540 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22249508 |
tgaaggaattcattcaatttacccaaacaataaattttaaaaatgaaaggaattcaattgaagcatttgaatt |
22249580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 699
Target Start/End: Original strand, 6561127 - 6561171
Alignment:
| Q |
655 |
aaagatgattaagccaccacaaatgataattaaaagcaaaattaa |
699 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
6561127 |
aaagaggattaagccaccacatatgataattaaaagaaaaattaa |
6561171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 22249327 - 22249367
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
22249327 |
gtgaactaaatcgaatcaagaaatttaataaattatgatag |
22249367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 372 - 596
Target Start/End: Complemental strand, 8471 - 8247
Alignment:
| Q |
372 |
ttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaa |
471 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8471 |
ttaattagttttaaaatggaagaaattatcagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaa |
8372 |
T |
|
| Q |
472 |
ggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttca |
571 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8371 |
ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttcgaatttcaaattcccttgaattttca |
8272 |
T |
|
| Q |
572 |
aatgctttatccaaacacactctaa |
596 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
8271 |
aatgctctatccaaacacactctaa |
8247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 8806 - 8567
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||| |||||||||||| || ||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
8806 |
cgaagaatattagatacatggattatacgtgtacttacaactctcataatacaaatatgagttttattaaaaaagtttttt------------------- |
8726 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataatatgccaaatgtttaatagaaggaa |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8725 |
cttacaagtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataatatgccaaatgtttaatagaaggaa |
8626 |
T |
|
| Q |
211 |
ttattagggaagaaaatatagttattttgtttcaattattaaaaaaaatgaacgattgt |
269 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8625 |
ttattaggaaataaaatatagttattttgtttcaattattaaaaaaaatgaacgattgt |
8567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 8557 - 8517
Alignment:
| Q |
288 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8557 |
gtgaacgaaatcgagtcaagaaatttaataaattatgatag |
8517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 369 - 594
Target Start/End: Original strand, 20266417 - 20266644
Alignment:
| Q |
369 |
cagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat |
468 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20266417 |
cagttaattagtttaaaaatggaagaatttataagaaataaaatttagtcaaagaaagaaaatcaattactttatcatccaaacaatgaattttgaaaat |
20266516 |
T |
|
| Q |
469 |
gaaggaattcattcactttacccaaataatgaattttgaaaatgaaaggaattcaattgaagcatttgaattcct--tagaatttcaaattcccttgaat |
566 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20266517 |
gaaggaattcattcacgtagcccaaacaatgaattttaaaaataaaagaaattcaattgaagcatttgaattccttatagaatttcaaattcccttgaat |
20266616 |
T |
|
| Q |
567 |
tttcaaatgctttatccaaacacactct |
594 |
Q |
| |
|
|||||||| | |||||||||| ||||| |
|
|
| T |
20266617 |
tttcaaatcatctatccaaacaaactct |
20266644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 20266142 - 20266317
Alignment:
| Q |
11 |
cgaagaaaattagacacatggattatatgtatacttacaactcttatagtacaaatattagttttattaaaaaagttttttgtttcaatatttttctatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20266142 |
cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatgttagttttattaaaaaagatttttgtttcaatatttttctatt |
20266241 |
T |
|
| Q |
111 |
cttacaagtcacgttttagagaataatccaaattcatttccatttcacctgattttgctaataatcgatgtataat |
186 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
20266242 |
ctcacaagtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataat |
20266317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 20266339 - 20266378
Alignment:
| Q |
289 |
tgaacgaaatcgagtcaagaaatttaataaattatgatag |
328 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20266339 |
tgaacgaaatcgagtcaaaaaatttaataaattatgatag |
20266378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 697
Target Start/End: Original strand, 44617031 - 44617102
Alignment:
| Q |
626 |
aatccgtttcaatatgactttgaaacaagaaagatgattaagccaccacaaatgataattaaaagcaaaatt |
697 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||| ||| |||||| ||| |||||||||||||| |
|
|
| T |
44617031 |
aatccgttacaatatgactcccaaacaagagagatgattaatacacaacaaataatagttaaaagcaaaatt |
44617102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 12251009 - 12250972
Alignment:
| Q |
661 |
gattaagccaccacaaatgataattaaaagcaaaatta |
698 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12251009 |
gattaagccaccacatgtgataattaaaagcaaaatta |
12250972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 754
Target Start/End: Original strand, 14019903 - 14019948
Alignment:
| Q |
709 |
attttcttcccaaacaaatcatgttctaataaggtttcataacaaa |
754 |
Q |
| |
|
|||||||||| || ||||||||| ||||||| |||||||||||||| |
|
|
| T |
14019903 |
attttcttccgaagcaaatcatgatctaatagggtttcataacaaa |
14019948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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