View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_low_21 (Length: 454)

Name: NF19748_low_21
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_low_21
NF19748_low_21
[»] chr6 (19 HSPs)
chr6 (129-261)||(31290833-31290965)
chr6 (186-330)||(26629201-26629346)
chr6 (186-330)||(26735177-26735322)
chr6 (18-108)||(26964088-26964178)
chr6 (18-108)||(26650847-26650937)
chr6 (18-108)||(26756815-26756905)
chr6 (151-257)||(26963980-26964086)
chr6 (151-257)||(26650739-26650845)
chr6 (151-257)||(26756707-26756813)
chr6 (128-197)||(27652757-27652826)
chr6 (94-150)||(27422832-27422888)
chr6 (128-187)||(26640274-26640331)
chr6 (128-187)||(26746240-26746297)
chr6 (77-116)||(26629362-26629401)
chr6 (77-116)||(26735338-26735377)
chr6 (128-170)||(27506761-27506803)
chr6 (205-249)||(26964723-26964767)
chr6 (26-123)||(27606872-27606969)
chr6 (270-330)||(27422971-27423031)
[»] scaffold0003 (2 HSPs)
scaffold0003 (94-150)||(64475-64531)
scaffold0003 (270-330)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (127-178)||(18719305-18719354)
chr4 (128-178)||(18674703-18674751)
chr4 (131-178)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 31290965 - 31290833
Alignment:
Q  129 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttatacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | |||||||||||    
T  31290965 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttatacc 31290866  T
Q  229 ataaagttcatacatataaatttttccacaaca 261  Q
    ||  ||||||||||||||||| || ||||||||    
T  31290865 atctagttcatacatataaatgttcccacaaca 31290833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 330
Target Start/End: Complemental strand, 26629346 - 26629201
Alignment:
Q  186 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 284  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26629346 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26629247  T
Q  285 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 330  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26629246 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 330
Target Start/End: Complemental strand, 26735322 - 26735177
Alignment:
Q  186 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 284  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26735322 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26735223  T
Q  285 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 330  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26735222 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26735177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 26964178 - 26964088
Alignment:
Q  18 aattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 108  Q
    |||||| ||||||||||||||||||||  | |||||  ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  26964178 aattcacgagatacattaaagagaaacggattaccagattgtaagacttcacaaagaaatggaagaaaaaatataaggagtagcagataaa 26964088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 26650937 - 26650847
Alignment:
Q  18 aattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 108  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26650937 aattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 26756905 - 26756815
Alignment:
Q  18 aattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 108  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26756905 aattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26756815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 26964086 - 26963980
Alignment:
Q  151 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 250  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| ||||| || | |||||||| |||||||||||||||||      
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaaggcttttgtataccatcaagttcatacatataaacg 26963987  T
Q  251 tttccac 257  Q
    |||||||    
T  26963986 tttccac 26963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 26650845 - 26650739
Alignment:
Q  151 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 250  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26650746  T
Q  251 tttccac 257  Q
    |||||||    
T  26650745 tttccac 26650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 26756813 - 26756707
Alignment:
Q  151 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 250  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26756714  T
Q  251 tttccac 257  Q
    |||||||    
T  26756713 tttccac 26756707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 27652757 - 27652826
Alignment:
Q  128 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 197  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652757 ttggaagcataaaaccaaaattttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 27422832 - 27422888
Alignment:
Q  94 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 150  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  27422832 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 27422888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 26640331 - 26640274
Alignment:
Q  128 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 187  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26640331 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26640274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 26746297 - 26746240
Alignment:
Q  128 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 187  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26746297 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26746240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 26629401 - 26629362
Alignment:
Q  77 tggaagaaaaaatatatggagtagcagataaaagtaaatt 116  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26629401 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 26735377 - 26735338
Alignment:
Q  77 tggaagaaaaaatatatggagtagcagataaaagtaaatt 116  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26735377 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26735338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 27506761 - 27506803
Alignment:
Q  128 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattc 170  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  27506761 ttggaagtacaaaaccaaaactttgagctatgaaacgatattc 27506803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 26964767 - 26964723
Alignment:
Q  205 ataggagaaaggtttctttataccataaagttcatacatataaat 249  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  26964767 ataggaaaaaggcttctttataccatcaagttcatacatataaat 26964723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 27606872 - 27606969
Alignment:
Q  26 agatacattaaagagaaacaaagtaccaatttgtaag-acttcaaaatgaaatggaagaaaaaatatatggagtagcagataaaagtaaattaattttt 123  Q
    ||||||||||||||||||    | ||||||||||||| |||| ||||| |||| |||||||||| |||   ||||| ||||||||||| ||||||||||    
T  27606872 agatacattaaagagaaatgtcgaaccaatttgtaagaacttaaaaat-aaatagaagaaaaaagataacaagtaggagataaaagtatattaattttt 27606969  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 27422971 - 27423031
Alignment:
Q  270 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 330  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  27422971 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 27423031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 64531 - 64475
Alignment:
Q  94 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 150  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  64531 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 64475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 64392 - 64332
Alignment:
Q  270 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 330  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  64392 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 64332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 18719305 - 18719354
Alignment:
Q  127 attggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 178  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18719305 attggaagtacaaaaccaaaact--gacttatgaaacgaaattctccacttc 18719354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 18674703 - 18674751
Alignment:
Q  128 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 178  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  18674703 ttggaagtacaaaaccaaaac--tgatttatgaaatgaaattctccacttc 18674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 18692787 - 18692832
Alignment:
Q  131 gaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 178  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||    
T  18692787 gaagtacaaaaccaaaact--gatttatgaaatgaaattctccacttc 18692832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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